Mpal031877.1
Basic Information
- Insect
- Mythimna pallens
- Gene Symbol
- -
- Assembly
- GCA_961205895.1
- Location
- OY540854.1:11157805-11159511[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.033 77 4.5 0.1 49 64 14 29 10 34 0.86 2 17 0.033 77 4.5 0.1 49 64 46 61 42 66 0.86 3 17 0.033 77 4.5 0.1 49 64 78 93 74 98 0.86 4 17 0.033 77 4.5 0.1 49 64 110 125 106 130 0.86 5 17 0.033 77 4.5 0.1 49 64 142 157 138 162 0.86 6 17 0.033 77 4.5 0.1 49 64 174 189 170 194 0.86 7 17 0.033 77 4.5 0.1 49 64 206 221 202 226 0.86 8 17 0.033 77 4.5 0.1 49 64 238 253 234 258 0.86 9 17 0.033 77 4.5 0.1 49 64 270 285 266 290 0.86 10 17 0.033 77 4.5 0.1 49 64 302 317 298 322 0.86 11 17 0.033 77 4.5 0.1 49 64 334 349 330 354 0.86 12 17 0.033 77 4.5 0.1 49 64 366 381 362 386 0.86 13 17 0.033 77 4.5 0.1 49 64 398 413 394 418 0.86 14 17 0.033 77 4.5 0.1 49 64 430 445 426 450 0.86 15 17 0.033 77 4.5 0.1 49 64 462 477 458 482 0.86 16 17 0.033 77 4.5 0.1 49 64 494 509 490 514 0.86 17 17 0.039 93 4.2 0.1 49 64 526 541 522 544 0.85
Sequence Information
- Coding Sequence
- ATGACGCCAGGTGAGGGAGACACTACCATGAGACAGCTGCTGCAGGAGACGCGCAGCATCACGCACCGCTGCAGCACGTGCTCGACGCGCTCAAGCATGACGCCAGGTGAGGGAGACACTACCATGAGACAGCTGCTGCAGGAGACGCGCAGCATCACGCACCGCTGCAGCACGTGCTCGACGCGCTCAAGCATGACGCCAGGTGAGGGAGACACTACCATGAGACAGCTGCTGCAGGAGACGCGCAGCATCACGCACCGCTGCAGCACGTGCTCGACGCGCTCAAGCATGACGCCAGGTGAGGGAGACACTACCATGAGACAGCTGCTGCAGGAGACGCGCAGCATCACGCACCGCTGCAGCACGTGCTCGACGCGCTCAAGCATGACGCCAGGTGAGGGAGACACTACCATGAGACAGCTGCTGCAGGAGACGCGCAGCATCACGCACCGCTGCAGCACGTGCTCGACGCGCTCAAGCATGACGCCAGGTGAGGGAGACACTACCATGAGACAGCTGCTGCAGGAGACGCGCAGCATCACGCACCGCTGCAGCACGTGCTCGACGCGCTCAAGCATGACGCCAGGTGAGGGAGACACTACCATGAGACAGCTGCTGCAGGAGACGCGCAGCATCACGCACCGCTGCAGCACGTGCTCGACGCGCTCAAGCATGACGCCAGGTGAGGGAGACACTACCATGAGACAGCTGCTGCAGGAGACGCGCAGCATCACGCACCGCTGCAGCACGTGCTCGACGCGCTCAAGCATGACGCCAGGTGAGGGAGACACTACCATGAGACAGCTGCTGCAGGAGACGCGCAGCATCACGCACCGCTGCAGCACGTGCTCGACGCGCTCAAGCATGACGCCAGGTGAGGGAGACACTACCATGAGACAGCTGCTGCAGGAGACGCGCAGCATCACGCACCGCTGCAGCACGTGCTCGACGCGCTCAAGCATGACGCCAGGTGAGGGAGACACTACCATGAGACAGCTGCTGCAGGAGACGCGCAGCATCACGCACCGCTGCAGCACGTGCTCGACGCGCTCAAGCATGACGCCAGGTGAGGGAGACACTACCATGAGACAGCTGCTGCAGGAGACGCGCAGCATCACGCACCGCTGCAGCACGTGCTCGACGCGCTCAAGCATGACGCCAGGTGAGGGAGACACTACCATGAGACAGCTGCTGCAGGAGACGCGCAGCATCACGCACCGCTGCAGCACGTGCTCGACGCGCTCAAGCATGACGCCAGGTGAGGGAGACACTACCATGAGACAGCTGCTGCAGGAGACGCGCAGCATCACGCACCGCTGCAGCACGTGCTCGACGCGCTCAAGCATGACGCCAGGTGAGGGAGACACTACCATGAGACAGCTGCTGCAGGAGACGCGCAGCATCACGCACCGCTGCAGCACGTGCTCGACGCGCTCAAGCATGACGCCAGGTGAGGGAGACACTACCATGAGACAGCTGCTGCAGGAGACGCGCAGCATCACGCACCGCTGCAGCACGTGCTCGACGCGCTCAAGCATGACGCCAGGTGAGGGAGACACTACCATGAGACAGCTGCTGCAGGAGACGCGCAGCATCACGCACCGCTGCAGCACGTGCGCCAACGAGACACTACCACACGCTGCGGCTAGTCTTGCGAATATCAACATGGTGGACACCCTACCCATACGCCGCATAAGCTTATTTTAG
- Protein Sequence
- MTPGEGDTTMRQLLQETRSITHRCSTCSTRSSMTPGEGDTTMRQLLQETRSITHRCSTCSTRSSMTPGEGDTTMRQLLQETRSITHRCSTCSTRSSMTPGEGDTTMRQLLQETRSITHRCSTCSTRSSMTPGEGDTTMRQLLQETRSITHRCSTCSTRSSMTPGEGDTTMRQLLQETRSITHRCSTCSTRSSMTPGEGDTTMRQLLQETRSITHRCSTCSTRSSMTPGEGDTTMRQLLQETRSITHRCSTCSTRSSMTPGEGDTTMRQLLQETRSITHRCSTCSTRSSMTPGEGDTTMRQLLQETRSITHRCSTCSTRSSMTPGEGDTTMRQLLQETRSITHRCSTCSTRSSMTPGEGDTTMRQLLQETRSITHRCSTCSTRSSMTPGEGDTTMRQLLQETRSITHRCSTCSTRSSMTPGEGDTTMRQLLQETRSITHRCSTCSTRSSMTPGEGDTTMRQLLQETRSITHRCSTCSTRSSMTPGEGDTTMRQLLQETRSITHRCSTCSTRSSMTPGEGDTTMRQLLQETRSITHRCSTCANETLPHAAASLANINMVDTLPIRRISLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -