Mpal029685.1
Basic Information
- Insect
- Mythimna pallens
- Gene Symbol
- -
- Assembly
- GCA_961205895.1
- Location
- OY540851.1:8882464-8902015[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.044 4.5 8.9 1.8 1 23 226 249 226 249 0.95 2 11 0.087 8.9 7.9 0.3 1 23 341 364 341 364 0.90 3 11 2.5 2.6e+02 3.3 1.3 1 23 423 445 423 445 0.91 4 11 2 2e+02 3.7 1.9 1 20 740 759 740 762 0.85 5 11 0.006 0.61 11.6 0.3 2 23 768 789 767 789 0.97 6 11 0.82 83 4.9 2.1 2 23 876 897 875 897 0.95 7 11 0.0082 0.84 11.2 0.6 2 23 913 934 912 934 0.96 8 11 4.4e-07 4.5e-05 24.6 2.6 1 23 940 962 940 962 0.99 9 11 0.00011 0.011 17.1 0.4 3 23 969 989 967 989 0.96 10 11 0.00011 0.011 17.1 0.6 2 23 996 1018 995 1018 0.96 11 11 0.00011 0.011 17.0 1.1 3 23 1057 1078 1056 1078 0.96
Sequence Information
- Coding Sequence
- ATGGCGGATACATCGAGAAAAAGGTCGAGAAAGTCTAAATTGGTGCCTCGAGAGTGTCTTATGGACGAAGATGATATTGAATTGCAGGTACCAGCgacaaaaataccaaaaaaccTAAAACAGAGGACAGATAAGGTAATAAACACAGAAGCCACTACTTCCTTACTTAAATCAACTGCATCCAATCTTGAAAAGCCTACAGAAGTCTGTGACACCAGCGTACTCAGAAAAATTAATGCTTCTGCTAGAAATAGCATCGAATTAGACAAAACGCCACCAATAAAATTCGAAATCGATGTACAAGTTGAATCATGTAAAGAAGAAGACGATTTTGGTGAACTGACTGAGAATAGAGAGGAGAATTCTCCATCAGAAGAAACGGAAGATGTGGTTGAGGAGTCcgttccttttttgaagtctgaAGAAGAGAATCAAAATATCCAACCGCCACGACCAATCACTCTGACTTTAGAATCTATACTAAAAGCTGTTGACAAGATACAAACTTCAGAAAACAAAGCCAATAAAATTTTAAGCATATACGTTAGAAACACTATAGGTTATGAGCAAAAAACCAAATTGAAATTTCATTGGCTGGAAAACCGAATTCAGGAGGCATTAGATGTATGGCGAGATTGGCAGACACTGAGCTTCCATAGAGGGGACCCTTTATTCTACAAATGTTACATCTGTACTAAATCATACTGGTACCTCTCAGACTTCCGTAGCCATCTATTCTCAGCCCACGCTGAAGATACTAAATTGAAAATTTCTATAGAACGATATGAGGTACATGAATGTAATCTAATAGCGTACCACAAAGAACCAATGTTAAACCAAGGCATATACACTCCGGGGCTTTGTTACCGTTGCGGTAGGGACTACGCTGCCCATGAGATGAAATCAAGGTTTCAGAACAGATATTTCAAGGAAGATGGTTGTTTCAAGTACTTTTTCAGTTGCGCTGGATTGATAGGCCATTTTCCTTCATGTTCCATTTGTAATGTAAACAACAAGCTGTTCCAATGTCTCATTTGTAAGACAAAATTTGATACGGACGAAGAAGTGAGAGATCATTTAGTTTTGTCTCATTCGGTTCGGTCTGATGTTCCTATTTTAACACATTATGGTAACAAAAAGAGTGCAGCAACAGAAAAATATAACTGTGCTAAGAATTGTTTTGGGAAGAATTTAGAGTGTGTTCACAGTCTCTCGGGTGTTCCAGAGAATTCTATAGAACCACACATGAAGCGACTTGTAGAGACGTATAAGTGTGAGTTATGTGGACTTGTAATGGTTTATAGTTGTATGAAATATGAACATATGTTGTCTCACACTGAAGATtatatgatagtaaaaaaatgtacagCATGTGAAGGTCTCAATGTGTTTGTCAATAGTGAAGACGCTGATGCACATTGGAATTTCCAACATAAGGTCATGGATTTGAGAcatgaactaaataattttcataggattttcGTTCCGTGGTCCTGTGTATATCAAAGTCTAGCGGAGCTTgatttgaaaaaacaaaaatttgcgGTGATTGAACAAGCATCGACATCAGAATCGCAAGAATCGTTTCCGGAAGTGCAAGGATCGACATCAGAATCGCAAGAATCGTTTCCAGAAGTGCAAGAATCGTTGTCAGAAGTGCAAGAATCGATGTCAGAATCACAAGAATCGATGTCAGAAGTACAACAATCAGTAGCAGATGAGGAAGAATCGGACTTAGAAGAAAAACCATCGCTACTGGATATTGACGAAGAAGAGTCTCAAGACTCAGAAGACAGCACAGGACTTGTAATCAAAGAAGAACCGCTTGAACAAGCTGACGATGAAACATTTGGAGAAGAAAGTGAAACACAGAGCTTTGATGAGCAAATAAAAGTGAAAGAAGAAAACGTTGACGAAGAAGTAGACGAATATGACGATCTCATCAAACTAAACTTTAATTTAGAAGATTTGTTAGTGAAAGAAGAATCTGTAGACCTTGATGATACTCAAGAATCAGAAAACGATTATAATTCAGATGAAGGCTCACAGGACTCAATGCTTAAACGTAAAACagctgtaaaaaatataaaaaaaagaaaaaggaaaagtaaaacaataaaaatttacaaatgcACTTGTGGTTTCCGATCTTTGCACAGGGAATACCGTGAACATTTAAAATACTATTGTACAAGAAACTTgatcaaaagtaaaaattttaaatgcacaAAATGCGATAACAATTTTGGTTCAATGAAGAAATACTTGGATCATTTCGTTGAGCATGGTTATCCGCGGATTTCTTGCCCAGATTGTATGAAAACATTTGACAATTTCACAAGTTTAGGTCAACATGTACAAACACATGTTCGGCAAAATTTTGTCCGTGTCAAAACGATTACGTATACCGGTGAGGCTATGGCCAAACATGAGCATCAGTGTACAAAATGTGCAGCACGTATTGACTATGCAGATTTCTTTGATCATTGGGAGACTCATCTCAAAGCTGAACCTTCTGTTCCTGTGGAAACGACTTCGAAAACGAAGGCTGCAGATGTAAAATGTGGACACTTAACTGAATCAATGATTAACGAGTGCATTGCTCGCCTGCATGTGACGACTAAGGAATGTAATGTGTGTCTCCGGATATTTAATCGCACAAACGAATGTAAACGTCACATTATTGAACACATGCTAATCGATGCGTACACACAGAAACATATCTACAAAGAATTGAGGTGTCAGATCTGTGAAAGCGGTTTCCCATTATCAGATAAATACAAGAAACACATGCGCGATCATGCGTCGCTGCCTGTCTACAAGTGTGAACTATGTGATCGGAGTTTCAGTGATTCTAGTAATTTTACGAAACATAAAAAAGTGCATAATTTAAAAGTGATTATCTGTGATCTGTGCGGCAAGAAGTTTCAGTCCAAATTGTCGTTGGAGAAGCATATTGAGAAACACAGAAACACAACACCGATACCGTGCAACATTTGCAACAAAGTCTTCTACTTCGACTCGTCATACCGTCGTCACGTGAGATCATATCACGAAAAATCCTCAACGGAATACGGCTGTGTCATTTGCGGAGAGCGTTTCTCGTGCCTAAAATTTAAATGGGATCATATGTGGGAGGTACATGAAGAACGGAAGCAGAAAGCAGATTGTCCTATATGTCACAAGTCCTTTAGAAAGTATTCCGATGTACGCGCACACGCAAAGTCTGAACATATGATGGCTATTACTGTAATCAGCATCAAAGGTGGAAAAACGCAATCGGCTGAAAAAAAACGCGACGTCGATATGCCTAAATTGTACAATGGTACCTGGCCAACGCTTACTGTTGGACCAGAAACGGAGACTTTGGTTGTTTATGATACGGATTGa
- Protein Sequence
- MADTSRKRSRKSKLVPRECLMDEDDIELQVPATKIPKNLKQRTDKVINTEATTSLLKSTASNLEKPTEVCDTSVLRKINASARNSIELDKTPPIKFEIDVQVESCKEEDDFGELTENREENSPSEETEDVVEESVPFLKSEEENQNIQPPRPITLTLESILKAVDKIQTSENKANKILSIYVRNTIGYEQKTKLKFHWLENRIQEALDVWRDWQTLSFHRGDPLFYKCYICTKSYWYLSDFRSHLFSAHAEDTKLKISIERYEVHECNLIAYHKEPMLNQGIYTPGLCYRCGRDYAAHEMKSRFQNRYFKEDGCFKYFFSCAGLIGHFPSCSICNVNNKLFQCLICKTKFDTDEEVRDHLVLSHSVRSDVPILTHYGNKKSAATEKYNCAKNCFGKNLECVHSLSGVPENSIEPHMKRLVETYKCELCGLVMVYSCMKYEHMLSHTEDYMIVKKCTACEGLNVFVNSEDADAHWNFQHKVMDLRHELNNFHRIFVPWSCVYQSLAELDLKKQKFAVIEQASTSESQESFPEVQGSTSESQESFPEVQESLSEVQESMSESQESMSEVQQSVADEEESDLEEKPSLLDIDEEESQDSEDSTGLVIKEEPLEQADDETFGEESETQSFDEQIKVKEENVDEEVDEYDDLIKLNFNLEDLLVKEESVDLDDTQESENDYNSDEGSQDSMLKRKTAVKNIKKRKRKSKTIKIYKCTCGFRSLHREYREHLKYYCTRNLIKSKNFKCTKCDNNFGSMKKYLDHFVEHGYPRISCPDCMKTFDNFTSLGQHVQTHVRQNFVRVKTITYTGEAMAKHEHQCTKCAARIDYADFFDHWETHLKAEPSVPVETTSKTKAADVKCGHLTESMINECIARLHVTTKECNVCLRIFNRTNECKRHIIEHMLIDAYTQKHIYKELRCQICESGFPLSDKYKKHMRDHASLPVYKCELCDRSFSDSSNFTKHKKVHNLKVIICDLCGKKFQSKLSLEKHIEKHRNTTPIPCNICNKVFYFDSSYRRHVRSYHEKSSTEYGCVICGERFSCLKFKWDHMWEVHEERKQKADCPICHKSFRKYSDVRAHAKSEHMMAITVISIKGGKTQSAEKKRDVDMPKLYNGTWPTLTVGPETETLVVYDTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01026819; iTF_01031509;
- 90% Identity
- -
- 80% Identity
- -