Mimp047844.1
Basic Information
- Insect
- Mythimna impura
- Gene Symbol
- -
- Assembly
- GCA_905147345.1
- Location
- LR990364.1:6493976-6509388[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.097 15 8.0 2.6 1 23 226 249 226 249 0.95 2 12 0.028 4.4 9.7 0.2 1 23 341 364 341 364 0.90 3 12 3 4.7e+02 3.3 1.3 1 23 423 445 423 445 0.91 4 12 4.5 7.1e+02 2.8 4.0 1 22 754 775 754 776 0.88 5 12 0.0017 0.27 13.6 0.3 2 23 782 803 781 803 0.95 6 12 0.2 32 7.0 2.1 2 23 890 911 889 911 0.95 7 12 0.0041 0.64 12.4 0.5 2 23 927 948 926 948 0.96 8 12 6.4e-07 0.0001 24.3 2.7 1 23 954 976 954 976 0.99 9 12 0.00012 0.018 17.2 0.6 2 23 982 1003 981 1003 0.96 10 12 0.00013 0.02 17.1 0.6 2 23 1010 1032 1009 1032 0.96 11 12 1.7 2.6e+02 4.1 0.6 1 10 1039 1048 1039 1058 0.89 12 12 0.00026 0.04 16.1 0.7 3 23 1071 1092 1070 1092 0.96
Sequence Information
- Coding Sequence
- ATGGCGGATACATCGAGAAAAAGGTCGAGAAAGTCTAAATTGGTGCCTCGAGAGTGTCTTATGGATGAAGATGATCTTGAATTGCAGgTACCAGCaacaaaaataccaaaaaatataaaacagagGACAGATGAGGTATTAAAAATAGAAGCCACTACTTCCTTACTTATATCAACTGCATCCAATCTTGAAAAGCCTACAGAAGTCTGTGACACTAGTGTACTCAGAAAAATTAATGCTTCAGCTAGAAATAGCATTGAATTAGACAAAACGTCACCAAGAAAATTCGAAATCGATATACAAGTTGAATCATGTGAAGATGAAGACGATTTTGGTGAACTGACTGAGAATAGAGACGAGAATTCTCCATCAGAAGAAACGGAAGATGTGGTTGAGAAGTCCATTCCTTTTTTGGAGTCTgaaaaagagaatcaaaatacCCAACCGCCACGACCAATAACTCTGACTCTAGAAAATATACTAAAAGCTGTTGACAAGATACAAACTTCAGAAAACATagccaataaaattttaagcaTATACGTTAGAAACACTATAGGTTATGAGCAAAAAACTAAATTGAAATTTCATTGGCTGGAAAACGGAATTCAGGAGGCATTAGATGTATGGCGAGATTGGCAAACGCTGAGCTTTCATAGAGGGGACCCTTTGTTCTATAAATGCTACATCTGTACTAAATCATACTGGTACCTCTCAGACTTCCGAAGCCATCTATTTTCAACCCACGCTGATGATACTAAATTGAAAATTTCTATAGAACGATATGAGATACATGAATGTAATTTAATAGCGTACCACAAAGAACcaatattaaaacaaatcatatatacTCCGGGCCTTTGTTACCGTTGCGGTAGAGACTATGCTGCCCATGAGATAACATCAAGGTTTCAGAACAAATATTACAAGGAAGACGGTTGTCACAAATACTTTTTCAGTTGCACCGGATTGATAGGACATTTTCCTTCATGTTCCATCTGTAATTTAAACAGCAAGCCGTTCCAATGTGATATTTGTAAGACAAGATTTGATACAGACGAAGAAGTGACGGATCATTTAGTTTTGTCTCATTTGGTTCGGTCCGATGTTCCTATTTTGACACATTATAGTAACAAAAAAAGTGtagaattagaaaaatataactgTGTTAAGAATTGTTTTGGGAAGAATTTAGAGTGTGTTCACAGTCTCTCGGATGTTCCAAAGAATGCTATAGAACCACACATGAAACGTCTTATAGGGACGTATAAGTGTGAGTTATGTGGACTTGTAATGGTGTATAGTTGTATGAAATACGAACATATGTTGTCACATACTGAAGACTatatgatagtaaaaaaatgtacagCTTGTGAAGGTCTCAATGTGTTTGTCAATAGTGAAGACGCTGATGCACATTGGAATTTCCAACATAAGACAATGGATTTGAGACATGAActtaataattttcataaaattttcGTTCCGTGGTCCTGTGTATATCAAAGTCTAGCGGAACTTgatttgaaaaaacaaaaatctgcgGTGGTTGAACAAGAATCGGTATCAGAAGCGCAAGAATCGACATCAGAAGCGCAAGAATCGATGTCAGAATCACAAGAATCGACATCAGAAGCACAAGAATCGATGTCAGAAGTACAACAATCAGTAGCAGATGAGCAAGAATCGGACTTGGAAGAAAAACCATCGCTACTGGATATTGACGAAGGTGCTGTATCAGCGTGTCAACAAAGTTGTTCACGAGATCAATTTGAGACGACAGATTTTAAAATGGAAAATATTGTAGTAAAAGAAGAGCCTCAAGACTCAGAAGACAGCACAGGACTTGTAATTAAAGAAGAACCTATTGAACAAGCTGACGATGATACATTTGGAGAAGAAAGTGATACACAGAGCTTTGATGAGCAAACAAAAGTGAAAGAAGAAAACGTTGATGAAGAAATAGACGAATATGACGATCTGATCAAACTGAACTTTAATTTAGAAGATTTGTTAGTGAAAGAAGAATCTGGAGATCTTGATGATACTCAAGAATCAGAAAATGATTATAATTCAGATGAAGGCTCACAGGACTCAATGCTTAAGCCTAAAACAGTtgtaaaagttataaaaaaaagaaaaaggaaaaataaagcaataaaaatttacaaatgcTCTTGTGGCTTTCGATCTTTGCACAGGGAATACCGCGaacatttaaaatacaattGTACAAGACACTTGAtaaatagtaaaagttttaaatgcACGAAATGCGATAACCATTTTGGTTCAATGAAGAAATATTTGAATCATTTCGTTGAGCATGGTTATCCGCGAATTTCTTGCCCAGAATGTACGAAGACATTTGAAAATTTCACTAGTTTAGGTCAACATGTACAATTGCATGTTCGGCAAAATTTTGTCCGTGTCAAAATGATTACTTATTCCGGTGAAGCTATGGCAAAACCTGAGCATCAGTGTACAAAATGTGCTGCACGTATTGACTATCCAGATTTCTTTGATCATTGGGAGACGCATATCAAAGCTGATCCTTCTGTTCCTGTTGATGTGACTCCGAAAACGAAGGCTAAAGATATCAAATGTGGACAGTTGAATGAATCAATTATACAGGAGTGCATTGCTCGCCTGTACGTGACCACTAAGGAATGTAATGTGTGTCTCCGGATATTCAATCGCACGAGTGAATGCAAACGTCACATCATTGAACACATGCTATGTGATGCGTACACACAGAAACACATCTACAAGGAACTTAGGTGCCAGATCTGTGAAAGCGGTTTCGCAGTATCAGACAAATACAAGAAACACATGCGAGATCACGCGTCGCTGCCTGTCTACAAGTGTGAACTATGTGATCGGACTTTCAGTGATTCTAGTAACTTTACGAAACATAAAAAAGTGCATAATTTAAAAGTGATTTACTGTGATCTGTGCGGCAAGAAGTTTCAGTCCAAATTGTCGTTGGAGAAGCATATTGAGAAACACAGAAACACAACACCGATACCATGCAACATTTGCAACAAAGTCTTCTACTTCGACTCCTCATACCGTCGTCACGTGAGATCAAATCACGAAAAATCTTCAACGGAATACCGCTGCGTCATTTGCGGAGAGCGTTTCCCGTGCCTAAAATTGAAATGGGATCACATGTGGGAGGTACATGAAGAAAGGAAGCAGAAAGCAGATTGTCCTATATGTCACAAGGCCTTCAGAAAGTATTCCGATGTACGCGCCCACGCAAAGTCTGAACATATGATGGCTATTACTGTTATCAGCATCAAAGGCGGAAAAACGCACGCGGCTGAAAAAAAACGCGACGTCAATATGCCTAAATTGTACAATAGTACCTGGCCAAAGCTTACTGTTGGACCAGAAACGGAGACTTTGGTTGTTTATGATTCAGATTGA
- Protein Sequence
- MADTSRKRSRKSKLVPRECLMDEDDLELQVPATKIPKNIKQRTDEVLKIEATTSLLISTASNLEKPTEVCDTSVLRKINASARNSIELDKTSPRKFEIDIQVESCEDEDDFGELTENRDENSPSEETEDVVEKSIPFLESEKENQNTQPPRPITLTLENILKAVDKIQTSENIANKILSIYVRNTIGYEQKTKLKFHWLENGIQEALDVWRDWQTLSFHRGDPLFYKCYICTKSYWYLSDFRSHLFSTHADDTKLKISIERYEIHECNLIAYHKEPILKQIIYTPGLCYRCGRDYAAHEITSRFQNKYYKEDGCHKYFFSCTGLIGHFPSCSICNLNSKPFQCDICKTRFDTDEEVTDHLVLSHLVRSDVPILTHYSNKKSVELEKYNCVKNCFGKNLECVHSLSDVPKNAIEPHMKRLIGTYKCELCGLVMVYSCMKYEHMLSHTEDYMIVKKCTACEGLNVFVNSEDADAHWNFQHKTMDLRHELNNFHKIFVPWSCVYQSLAELDLKKQKSAVVEQESVSEAQESTSEAQESMSESQESTSEAQESMSEVQQSVADEQESDLEEKPSLLDIDEGAVSACQQSCSRDQFETTDFKMENIVVKEEPQDSEDSTGLVIKEEPIEQADDDTFGEESDTQSFDEQTKVKEENVDEEIDEYDDLIKLNFNLEDLLVKEESGDLDDTQESENDYNSDEGSQDSMLKPKTVVKVIKKRKRKNKAIKIYKCSCGFRSLHREYREHLKYNCTRHLINSKSFKCTKCDNHFGSMKKYLNHFVEHGYPRISCPECTKTFENFTSLGQHVQLHVRQNFVRVKMITYSGEAMAKPEHQCTKCAARIDYPDFFDHWETHIKADPSVPVDVTPKTKAKDIKCGQLNESIIQECIARLYVTTKECNVCLRIFNRTSECKRHIIEHMLCDAYTQKHIYKELRCQICESGFAVSDKYKKHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLKVIYCDLCGKKFQSKLSLEKHIEKHRNTTPIPCNICNKVFYFDSSYRRHVRSNHEKSSTEYRCVICGERFPCLKLKWDHMWEVHEERKQKADCPICHKAFRKYSDVRAHAKSEHMMAITVISIKGGKTHAAEKKRDVNMPKLYNSTWPKLTVGPETETLVVYDSD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029721;
- 90% Identity
- -
- 80% Identity
- -