Mlor025764.1
Basic Information
- Insect
- Mythimna loreyi
- Gene Symbol
- -
- Assembly
- GCA_029852875.1
- Location
- CM056806.1:6313335-6330811[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-07 0.0052 17.7 0.4 19 48 470 499 454 503 0.83 2 4 0.001 35 5.5 0.0 27 49 532 554 527 557 0.93 3 4 0.0099 3.3e+02 2.4 0.1 15 45 658 688 649 693 0.82 4 4 0.01 3.3e+02 2.3 0.0 24 52 791 819 787 820 0.93
Sequence Information
- Coding Sequence
- atgaaGTGCTGTTTAAAAAATTGTCGAAATAACACTAAAGTGAAGAAACAGCCCGGCGGCAGTTCTGATTGGGTCACCTTTCATTTGATTCCAAAGGACCAGAAGTTGAGAGCAGCATGGCTTCAGGCACTGTCCATACCAAACTGGATGACGTTGAACGGAGCTGCTATTTGTTCAGACCATTTCAAAGAAGATGACTTTTTTCTCACTAAGCAAGGGATCAGGAGGGTTAAGAAAGGGGTTGTACCGTTTGTTGAAGCCTGCAGAGTATGCCTGTCAATAGACCTGAAGATGTATCAATTGAGAGACACCGCTTTGGCCAAATGTTATCTAAATATTGTGGGAATTCCGCCGAAAGCAGACCTGAGGAACAGACTCCCGATGGGCATCTGTTGGGAATGCACCGCAAGGCTGGAGTCTGCGGCCTCGTTCAAGGCCAAAGCGCTTTTCACGGAGGCCCTACTGCGTGAACACCTAGAGAATAATGCTGAACTAAATATCACCGACATACAAAACTACCAACGTGACCACAAGAATTTAAAACCATCAATGGCAGTTCAagaagtttttaaatttaacagcAACGATTTCGAAGAACATGCTCCTAACTCAATCAAATCAGAAGCAATCGGAATACCGCATAATGAAGAAATTGAAATCGAAGTGCAAAATTTAGTAACAGAAACTATAACTATAAAAGATGAAAGCAAAAACGTTATAATCGAAGAGATCTGTCCTACTAGTGACGTCAAAACTGAAATCGATTTACTTCCGATTACAGAAATCAACATTGCTAACAATCAAATCGATTTTGAAGAGCTTATAGAAAAAGATAGTTGTGTAGTTAAAGAGAAAGTTTttgttaatgaaaataaagttagtttagataatattgttttatttaaaagtgaGGCAGTTAAAGGTACTGCGAATCTTACTGATGAGATTTCTTTGGACAATGTTGATAAAAATATCtctgatgctgatgatgacatTGCTAGCGTAATGGACTTTAATGATGATGTAGTTAGtattggtgatgatgatgaggatgagGATGTTAAAGTCACAAATGAAAGAGTTAAGACagtaaagaagaagaaagaaagaaataaaaagaaggaGCAGTCTGTCAAAAGGAAAGGGACGAAGAGGACGTATGATGATGTTGTTATATGGGTCAAAGGGAAGAGGCCGAAAAAACCAACCAAAACCCCCTACGTAAAACCCTGTATACCCATAGACGAGAATATCTTTACTGTGAAGACCCTAAACCATGAGGATTTGAGACGCGAAGTGCTGGAGCGCAAAGAGGGAGACCAGTATAAATTGGCGCGGCACAAATGTAACGTGTGCTACAAAGGGTTCCCTACGGCGGAGAAGCAAGCGAGGCATATGGTTAAGCATAGCGAGGAAAGCGGACCGATAAAGTGCAACATATGTTATGGGCGTATGAAAAGAAGTAGAGATTTGCGCGCTCATATGAAGAGACAGCACTCTTCAGAATATAGTTGTAACCTCTGCCCTTTGGTCACTAGATGTCGaaatGTGGCGTTAGGACATGTGAAGTATCATGAAGGGAACAAATACGAGTGTCCACAGTGTTCTGTTGTGTTCGAGAAAAAAACAACACTACTGAACCATTTGCGTCTGAAACACATGTCTTCGTTTGTATGTGAACTTTGTGGTTACACGTTTGTTAGTAAGGCTGGCGTCGAAGTGCACAAGAGAATGAGACATAAGCTGTTCGATAAAAACaCGGAATTCAAAGGGCAATACTGTGAAGTGTGTGATGTGAAGTTCTTGAATGACAAGGCGTACAACAAACATCTGCTGTTGTCTTCCAAACATATATCGGAAGATGACCCCAACCGCATAAGCAACGACCCTTCAATAAAACAGCGTCGCCTCAGTTGCTATTGGCAGAACGATCGTCGCTTCACGCGTCGACCCGTCATACATCGGAAAGACCCGAACAGCGCGCCCGCCGGTAACAAACCGGTCACTTGTGAACAGTGTGGTGGGGTACTAGAAAGTTTCCGCGCATACGTGGCTCACTTCAGGTATTATCACCCAGGCCTCAAACGCACGCAGTTCGGAAACAATATTGCTCCGTATATGTGTGAGCATTGTGGAAAATTCTTCTGGAACACAACGACCCTATCCTGCCACATGTGGGTCCACACGGGACAGAAGCGCTTCCAATGCGACCACTGCAACAAGTCGTTCACGATGAAGTCCAACCTTGCCGGTCACATGCGGCAACATGACCCCGGCGTGCGGCGCACGTACGATTGTCGCGTGTGCGGCAAGCAGTTCACCTTTAGCTATAATCGTACGAGGCATATGTTTGTACACACAGGCTTACGTCCATACAAATGCGATGCCTGTGAAAAAACATTCCGGACGAAGGGTGAACTGCAATCTCACATCGACTATGTACACTTGAAGAAGCCACGACCCAAACGCATCAGACGGAAGACCAAGAAATGCGAGATCCCCAGCTTAGAGTATTAA
- Protein Sequence
- MKCCLKNCRNNTKVKKQPGGSSDWVTFHLIPKDQKLRAAWLQALSIPNWMTLNGAAICSDHFKEDDFFLTKQGIRRVKKGVVPFVEACRVCLSIDLKMYQLRDTALAKCYLNIVGIPPKADLRNRLPMGICWECTARLESAASFKAKALFTEALLREHLENNAELNITDIQNYQRDHKNLKPSMAVQEVFKFNSNDFEEHAPNSIKSEAIGIPHNEEIEIEVQNLVTETITIKDESKNVIIEEICPTSDVKTEIDLLPITEINIANNQIDFEELIEKDSCVVKEKVFVNENKVSLDNIVLFKSEAVKGTANLTDEISLDNVDKNISDADDDIASVMDFNDDVVSIGDDDEDEDVKVTNERVKTVKKKKERNKKKEQSVKRKGTKRTYDDVVIWVKGKRPKKPTKTPYVKPCIPIDENIFTVKTLNHEDLRREVLERKEGDQYKLARHKCNVCYKGFPTAEKQARHMVKHSEESGPIKCNICYGRMKRSRDLRAHMKRQHSSEYSCNLCPLVTRCRNVALGHVKYHEGNKYECPQCSVVFEKKTTLLNHLRLKHMSSFVCELCGYTFVSKAGVEVHKRMRHKLFDKNTEFKGQYCEVCDVKFLNDKAYNKHLLLSSKHISEDDPNRISNDPSIKQRRLSCYWQNDRRFTRRPVIHRKDPNSAPAGNKPVTCEQCGGVLESFRAYVAHFRYYHPGLKRTQFGNNIAPYMCEHCGKFFWNTTTLSCHMWVHTGQKRFQCDHCNKSFTMKSNLAGHMRQHDPGVRRTYDCRVCGKQFTFSYNRTRHMFVHTGLRPYKCDACEKTFRTKGELQSHIDYVHLKKPRPKRIRRKTKKCEIPSLEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01028674;
- 90% Identity
- iTF_01028674;
- 80% Identity
- iTF_01028674;