Mlor017808.1
Basic Information
- Insect
- Mythimna loreyi
- Gene Symbol
- -
- Assembly
- GCA_029852875.1
- Location
- CM056795.1:4942340-4943002[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-07 0.00016 22.2 0.0 2 36 16 50 15 57 0.94 2 2 3.7 2e+03 -0.5 0.0 24 34 90 100 89 106 0.86
Sequence Information
- Coding Sequence
- ATGCCGCGAAACTACGAAAGAAAAACTAATCGGCAATCTTGGAGCCAAGAGTCCATGAATAAGGCTATAGAAGCAtggaagcaaaaaaaaatgggatgGGAATTGGCAGCAAAAACATTTGGTGTTCCTCAGGCGACACTTAGAAGACATGCACTCAATATGAACAAAACCTTGAATTCTAACTCTAAAGGATTAGGAAGATTCAAGAAAACATTTTCAACTGAAATTGAGCAGGAGTTAGTAAAACATATAAAGTTTTTGGAAAcacgaatttttggtttgacGCGCACATCACTCCAAGAGCTTGCCTTTGAACTAGCAGAAAAAAATGGTATCGATCACCCTTTCAACAAGGACAAGAAACGTGCTGGACAAGAATGGCTTGAAGGTTTCCTTAGAAGAAATAAGGACGTTTCTCTGCGCTCTCCAGAACCAACTTCTGCTGCAAGAGCGCAAGCGTTTAATAAACCACAGGTAGCAAAATTTTTTCGTATTTATGAAGATGTGTTGAAGTCTCACAATTTTGGACCTCACCGAATATTTAATATGGATGAGACCGGGCTCACTACAGTCCAGAAACCACAAAAAATTCTGGCTACCAAAGGCAGAAAACAAGTCGGCTGTCTCACCAGTGCTGAGAGAGGTTCGAATGTGACAGTATGA
- Protein Sequence
- MPRNYERKTNRQSWSQESMNKAIEAWKQKKMGWELAAKTFGVPQATLRRHALNMNKTLNSNSKGLGRFKKTFSTEIEQELVKHIKFLETRIFGLTRTSLQELAFELAEKNGIDHPFNKDKKRAGQEWLEGFLRRNKDVSLRSPEPTSAARAQAFNKPQVAKFFRIYEDVLKSHNFGPHRIFNMDETGLTTVQKPQKILATKGRKQVGCLTSAERGSNVTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00710147;
- 90% Identity
- -
- 80% Identity
- -