Ehec004244.1
Basic Information
- Insect
- Eurema hecabe
- Gene Symbol
- -
- Assembly
- GCA_026213755.1
- Location
- JADANM010005989.1:9349606-9350148[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-07 0.00013 22.0 0.0 2 36 16 50 15 59 0.85 2 2 3.4 2.5e+03 -1.2 0.0 24 34 90 100 90 106 0.83
Sequence Information
- Coding Sequence
- ATGCCGCGAAACTACGAAAGAAAAACTAATCGGCAGTCTTGGAGCCAAGAATCCATGAGCAAGGCTATTGAAGCATGGAAGCAAAATAAAATGGGATGGGAATTAGCCGCAAAAACATTTGGTATTCCTCAGGCAACGCTTAGAAGACATGCATTAAATAGAAACAAAACCTTGGACCCCACTTCTAAAGGATTAGGAAGATTCAAGAAAACTTTTTCAACCGAAATTGAGAAGGAGTTAGTAGAACACATAAAATTTTTAGAAACACGACTTTTTGGTTTGACGCGAACGTCACTCCAAGAGCTTGCTTTTGAACTAGCTGAAAAAAATGGTTTCGAACACCCTTTCAACAAGGACAAAAAACGCGCTGGACAAGAGTGGCTTGAAAGCTTCCTGAAAAGAAATAAGGATATTTCTCTGCGTGCTCCAGAACCAACATCTGCTGCAAGAGCGCAAGCCTTTAATAAGCCACAAGTAGCGAAGTTTTTCCATATTTATGAGGAATTTTTGAAGTGTCACAATTTGGAACCACCGAATTTATAA
- Protein Sequence
- MPRNYERKTNRQSWSQESMSKAIEAWKQNKMGWELAAKTFGIPQATLRRHALNRNKTLDPTSKGLGRFKKTFSTEIEKELVEHIKFLETRLFGLTRTSLQELAFELAEKNGFEHPFNKDKKRAGQEWLESFLKRNKDISLRAPEPTSAARAQAFNKPQVAKFFHIYEEFLKCHNLEPPNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01028230; iTF_00710149; iTF_01178488;
- 90% Identity
- -
- 80% Identity
- -