Mlor000216.1
Basic Information
- Insect
- Mythimna loreyi
- Gene Symbol
- -
- Assembly
- GCA_029852875.1
- Location
- CM056777.1:4536469-4537569[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.8e-08 2.6e-05 24.7 0.0 14 40 26 52 15 56 0.82
Sequence Information
- Coding Sequence
- atggtaaataaatataaaagaaaaaccacAAATGCTTCCTGGGACGAAGATATTATGAAACGGGCAATGGAGGAAGCTGGCAAGACTTCCGTCAAAGGTGCAGCCAAGAAATACGGCATCAATCTATCTACATTACAGCGGCACATCAAAAAAGGATGCCCGAAAAGAAAACTTGGTAGGTTCATCactgtttttaatgaaaaccagGAGAAAGAACTGCTGGAATATGTCTTTCATATGGACTCACTCTTTTTTGGATTaactaaaattgattttttgaaGCTTGTATACCAATATGCTGAGATTAATCACATTCCTCACCCATTCAAGAATAATACCGCAGGTGAGGATTGGTTCGCCGGGTTTAAAATGCGTCATCCTGATATGAGTCTTCGTCGGCCAGAACCAACATCTATAGCACGTGCCAGAGGTTTTAACAAACCTCAAGTTCAAAGGTTTTTCGATATACTAGAACAAGAGATAGAAAAACACAATATTGACGCGACACGGATTTATAACGTCGATGAGACTGGGGTTCAAACTACCAGCAATAGGCCTCCCAGAATCCTTTGCAGATCGGGAAAAAAGCAAGTGGGTGTAATTTCAAGTGTCGAACGAGGTAAATTAACGACCATTGTATGCTGCTGCAATGCAGCAGGTTCGTTTATACCACCTTTTCTAATTTTTGGCCGAAAGCGGATGGTGCCTAGACTTCTAGATGGGGCTCCACCTGGATCGGTAGCCAGTTGTACCGACAATGGCTGGATTAATGGCCCAACATTTTTGGAATGGCTACGTCATTTCGTGGATATGACTAGGCCCACAGAACAAAGAAAAATTCTCTTGGTGATGGATAACCACGAGTCGCACAAACATCTTCAAGCCTTAGAGTTTGCCTCGAAGAACCATGTGATTTTTGTGTCTTTTCCACCACATACTACACACCGATTGCAACCGCTTGATACGTGCGTGTATGGACCATTGAAAATCTATTTTGAGCAAGCCATTTCCCTGTTCCAAAGAACTCATGTTGGGCGTATCGTATCACAATATGAATTGGCAAGGTTGTTTAACGAGGCCTACCTACATGAAAGCGGCTAG
- Protein Sequence
- MVNKYKRKTTNASWDEDIMKRAMEEAGKTSVKGAAKKYGINLSTLQRHIKKGCPKRKLGRFITVFNENQEKELLEYVFHMDSLFFGLTKIDFLKLVYQYAEINHIPHPFKNNTAGEDWFAGFKMRHPDMSLRRPEPTSIARARGFNKPQVQRFFDILEQEIEKHNIDATRIYNVDETGVQTTSNRPPRILCRSGKKQVGVISSVERGKLTTIVCCCNAAGSFIPPFLIFGRKRMVPRLLDGAPPGSVASCTDNGWINGPTFLEWLRHFVDMTRPTEQRKILLVMDNHESHKHLQALEFASKNHVIFVSFPPHTTHRLQPLDTCVYGPLKIYFEQAISLFQRTHVGRIVSQYELARLFNEAYLHESG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01085125; iTF_01085129; iTF_01192656; iTF_00951758; iTF_00761617; iTF_01026113; iTF_00842596; iTF_00637584; iTF_00281173; iTF_01209205;
- 90% Identity
- iTF_00951758;
- 80% Identity
- -