Mlor016280.1
Basic Information
- Insect
- Mythimna loreyi
- Gene Symbol
- cheC
- Assembly
- GCA_029852875.1
- Location
- CM056793.1:17645535-17647583[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.6e-09 1.9e-06 28.3 0.0 2 40 15 52 14 56 0.85
Sequence Information
- Coding Sequence
- ATGGACCAATCTGTgccaaagaaaaagaagaagtcaTGGAATCCCGAAAATTTGAAGGCTGCACTTGAGGCTATACGAAACGGGAGCAAAATAAAGGCAGCTGCTAGAAACTTTGGTATCCCCGAATCCACAATTAGGGATCGACTTAAATTGGGAGAAAATTATGACCCCCCCATGGGGAGAAAGGCTACATTTACACGTGAAGAAGAGAAAGAATTGGTCTCATTTATTACTCTAATGGCAAAGAAGTTTTATGGGATAACTCAGCAACAGTTGCGTAAATTGGCATATGACTTTGCCGTagcaaaaaacattaaaaatattttttcgtcaGAGAAAAAGATGGCGGGAAAATGTTGGGTGTATTCCTTTTTGAAAAGAAATCCCGGAATTTCTTTGAGGCTTCCCGAGCCAACAAGTATAAACAGGATTTTGGGATTTAACAAATCCGAAATAGCCATTTTTTTCACTAACTTAGAGACACTTATGACACAGCATAATTTTCCAGCCAATCGAATCTTTAATGTTGATGAGACAGGCATTAGCAACGTTCAAAAACCAGGTAAAATTTATGCTCCAACAGGACTAAAGCAAGTCGGAAAGGCTACAAGTGCAGAACGTGGCCAGAACGTCACAGTTGTATGTGCACTTAGCGCCACAGGACTATATGTTTCGCCGATGTTTATTTATCCACGACAAAGaattaaaccttccctgaaaaTTGGTGGTCCACCAGGCGCTATCTATGAATGTTCTAAATCTGGGTGGATAAATGAAGATCTTTTCACGAAATGGTTGCATCATTTTGCTACAAATATTAGTGCTTCTAAGCAAAATCCGGCGCTCCTTATTCTAGACAATCATTGCAGTCATCAATCGCTCAATGCATATGAATTTTGTCGTGAAAATGGAATCCATCTCTTATCTCTGCCTCCTCATACATCGCATAAGATGCAACCACTCGATGTTACATTTTATGGGCCATTAAAATCAGCATATTCTCGAGAGtgtgatttatttatgaaaatgcATCCATTTGAAAAAATCACGCATGACCATTTGGCTTCAATATTTAATAAAGCTTATATTCGAGTGGCTACGATGGAAAAAGCTGTCAAGGGATTTGAAGTGACTGGGATATATCCATTGAATCCTCATATTTTCGACGACGAAGATATTTTAACTGCTGATCCTATCATTGAAGAAGCATCCACAGAAGTTAGGCAACCAGTTGTCGAAAATGAGTTTATAGAACCAGCAATTGGACATGACGAATCCACTCGAAGTCTGCCATCGTCACCATCAATTTTTGACCGGCCTCATGAAACTAGATCTTATACTCCCCAGAGACAAACCGACCAAAATCCTGTTGACATTTTTGCTAAAGAGACAGCATCGGGCATACCATTTAACAGCAATGGAATAAAAGACACGCTTTCCGCTGCTTTAAATGAAGATATCAGGAAAGATATTGTTGAGCCGAGCACTTCTCGACGTATTTTAGAAGATTTGAGTCCTATACCccaaaagacaataaaaatacagagaCGTGTTAAAAAACAGCACTCTATTATTCTCACATCTACTCCATTAAAGGAGCAGTTAgaggaaaaagaaagaaagcgaCAAATGAAGATAGCAAAAGAAAAGAACGCTGCAGAGAAGAAAGTTAAAGAAAGGAAACAAACTAAAGGAAAGTCTGTCAAGAGAAGAGTTTTGAACGATAGCGAAACTAGTGAggataaagataataatatgaaaagCAATAAGAAAAAGGTCAGGCAAGGAAAATCGAAAGGCAAAGGAAAGTCTAAGAAATTTATTGACAGCAGCAGTGAAGATAGCATGGATGATGTGCCCCTAACTCAACTATGCGATGATGATAAAGATGACGATATAGAAAATCGTGATATTTGCGCCGTATGTCAAGAGTTTGGTCGTAATAGAGAAATCTGGTTCCGTTGTTGTAGATGCGCGAATTGGATACATAAGGAATGTAGCGGACAAGATTCtgccaataattttatttgtgatttttgctgtgattaa
- Protein Sequence
- MDQSVPKKKKKSWNPENLKAALEAIRNGSKIKAAARNFGIPESTIRDRLKLGENYDPPMGRKATFTREEEKELVSFITLMAKKFYGITQQQLRKLAYDFAVAKNIKNIFSSEKKMAGKCWVYSFLKRNPGISLRLPEPTSINRILGFNKSEIAIFFTNLETLMTQHNFPANRIFNVDETGISNVQKPGKIYAPTGLKQVGKATSAERGQNVTVVCALSATGLYVSPMFIYPRQRIKPSLKIGGPPGAIYECSKSGWINEDLFTKWLHHFATNISASKQNPALLILDNHCSHQSLNAYEFCRENGIHLLSLPPHTSHKMQPLDVTFYGPLKSAYSRECDLFMKMHPFEKITHDHLASIFNKAYIRVATMEKAVKGFEVTGIYPLNPHIFDDEDILTADPIIEEASTEVRQPVVENEFIEPAIGHDESTRSLPSSPSIFDRPHETRSYTPQRQTDQNPVDIFAKETASGIPFNSNGIKDTLSAALNEDIRKDIVEPSTSRRILEDLSPIPQKTIKIQRRVKKQHSIILTSTPLKEQLEEKERKRQMKIAKEKNAAEKKVKERKQTKGKSVKRRVLNDSETSEDKDNNMKSNKKKVRQGKSKGKGKSKKFIDSSSEDSMDDVPLTQLCDDDKDDDIENRDICAVCQEFGRNREIWFRCCRCANWIHKECSGQDSANNFICDFCCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00744576;
- 90% Identity
- iTF_00824681;
- 80% Identity
- -