Hmis002932.1
Basic Information
- Insect
- Hypolimnas misippus
- Gene Symbol
- cheC
- Assembly
- GCA_008963455.1
- Location
- JBBEEQ010000004.1:3813851-3815951[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-08 1.6e-05 25.3 0.0 2 40 15 52 14 56 0.85
Sequence Information
- Coding Sequence
- ATGGACCAATCTGTGCcaaagaaaaagaagaagttATGGAATCCCGAAACTTTGAAGGCTGCCCTTGAGGCTATACGAAACGGGAGCAAAATAAAGGCAGCTGCTAGAAACTTTAGTATCCCCGAATCTACGATTAGGGATCGACTTAAATTGGGAGAAAATTATGATCCCCCCATGGGGAGAAAGGCCACATTTACACAAAAAGAAGAGAAAGAAATGGTCTCATTTATTACTCTAATGGCAAAGAAATTTTATGGGATAACTCAGCAACAGTTGCGTAAATTGGCATATGACTTTGCTGTtgcaaaaaacattaaaaatattttttcgtcagAGAAGAAGATGGCGGGAAAATGTTGGGTGTATTCCTTTTTGAAAAGAAATCCCGGAATTTCTTTGAGGCTTTCCGAGCCAACAAGTATAAACAGTATTTTGGGCTTTAACAAATCCGAAATAGCTATTTTTTTCACTAACTTAGAGACACTTATGACAAAGCATAATTTTCCAGCCAATCGAATCTTTAATGTTGATGAGACAGGCATTAGCAACGTTCAAAAACCAGGTAAAATTTATGCTCCAACAGGACCAAAGCAAATCGGAAAGGCTACAAGTGCAGAACGTGGCCAGAACGTCACAGTTGTATGTACATTTAGCGCCACAGGGATATATGTTTCGCCGATGTTTATTTATCCACGACAAAGAATTAAACCTTCCCTAAAAATTGTTGGTCCACCAGGCGCAATCTATGAATGCTCTAAATCTGGGTGGATAAATAAAGATCTTTTCACGAAATGGTTGCATCATTTTGCTACAAATATTGGTGCTCATAAGCAAAATCCGGCGCTCCTTATTCTAGACAATCATTGCAGTCATCAATCGCTCAACGCATATGAATTTTGTCGCGAAAATGGAATCCATCTCTTATCTCTGCCTCCTCATACATCGCATAAGATGCAACCACTCGATGTAACATTTTATGGGCCATTAAAATCAGCATATTCTCGAGAGTGTGACTTATTTATGAAAATGCATCCATTTGAAAAAATTACACATGATCATTTAgcttcaatatttaataaagcttATACTCGAGTGGCTACGATGGAGAAGGCTGTCAAGGGATTTGAGGTGACTGGGATATATCCATTGAATCCTCATATTTTCGATGACGAAGATATTTTAACTGCTGATCCTATCATTGAAGAAGTATCCACGGAAAATCCTGTTGACGTTTTTGCTAAAGAGACAGCATCGGGCATACCATTTAACAGCAATAGAAATAAAGACACGCCTTCCGCTGCTTTAAATGAAGTAATCAGTAAAGATATCGCTGAGCCGAGCATTTCACGACGTATTTTAGAAGATTTGAGTCCTATACCACAaaagacaataaaaatacaGAGACGTGTAAAAAAACAGCATTCTAGTATCCTCACATCAACTCCATTAAAGGAGCAGTTAGAGGAAAAAGAACGAAAGCGACAAATGAAGATAGCAAAAGAAAATAACGCTGCAGTGAACAAAGTTAAAGAAAAGAAACAAACTAAAGGAAAGTCTGTCAAGAGAAGAGTTTTGAACGGTAGTGAAATTAGTGAGGATGaagataataatatgaaaagcgATAAGAAAAAGGTCAGGCGAGGAAAACCGAAAGGCAAAGGAAAGTCTAACAATAAGAAAATGATTGATAGCAGCAGTGAAGATAGCATGGATGATGTGCCGCTAACTCAGCTATACGATGATGACGAAGATGACGAAATAGAAAATCGGGATATTTGCGCCGTATGTCAAGAGTTTGGTCGAAATAGGGAAATCTGGTTCCGTTGTTGTAGATGCGCTAATTGGATACATAAGGAATGTAGCGGAAAAGATTCtgccaataattttatatgtgatTTTTGCTGTGATTAA
- Protein Sequence
- MDQSVPKKKKKLWNPETLKAALEAIRNGSKIKAAARNFSIPESTIRDRLKLGENYDPPMGRKATFTQKEEKEMVSFITLMAKKFYGITQQQLRKLAYDFAVAKNIKNIFSSEKKMAGKCWVYSFLKRNPGISLRLSEPTSINSILGFNKSEIAIFFTNLETLMTKHNFPANRIFNVDETGISNVQKPGKIYAPTGPKQIGKATSAERGQNVTVVCTFSATGIYVSPMFIYPRQRIKPSLKIVGPPGAIYECSKSGWINKDLFTKWLHHFATNIGAHKQNPALLILDNHCSHQSLNAYEFCRENGIHLLSLPPHTSHKMQPLDVTFYGPLKSAYSRECDLFMKMHPFEKITHDHLASIFNKAYTRVATMEKAVKGFEVTGIYPLNPHIFDDEDILTADPIIEEVSTENPVDVFAKETASGIPFNSNRNKDTPSAALNEVISKDIAEPSISRRILEDLSPIPQKTIKIQRRVKKQHSSILTSTPLKEQLEEKERKRQMKIAKENNAAVNKVKEKKQTKGKSVKRRVLNGSEISEDEDNNMKSDKKKVRRGKPKGKGKSNNKKMIDSSSEDSMDDVPLTQLYDDDEDDEIENRDICAVCQEFGRNREIWFRCCRCANWIHKECSGKDSANNFICDFCCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00824680;
- 90% Identity
- iTF_00824680; iTF_01028210;
- 80% Identity
- -