Basic Information

Insect: Mythimna lalbum
Gene Symbol: -
Assembly: GCA_949319445.1
Location: OX439373.1:10617237-10628577[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.59 58 5.4 2.9 1 23 396 418 396 418 0.95

2 9 1.7e-06 0.00017 22.8 0.8 1 23 465 488 465 488 0.97

3 9 0.00014 0.013 16.9 0.3 2 23 494 515 494 515 0.97

4 9 3.3e-05 0.0033 18.8 3.5 1 23 523 545 523 545 0.97

5 9 5.1e-06 0.0005 21.3 1.3 1 23 550 572 550 572 0.96

6 9 0.0001 0.01 17.3 1.4 1 23 581 603 581 603 0.99

7 9 9e-07 8.8e-05 23.7 0.8 1 23 609 632 609 632 0.97

8 9 0.11 10 7.8 0.5 1 14 638 651 638 661 0.80

9 9 5.1 5e+02 2.5 4.3 1 23 669 692 669 692 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.59	58	5.4	2.9	1	23	396	418	396	418	0.95
2	9	1.7e-06	0.00017	22.8	0.8	1	23	465	488	465	488	0.97
3	9	0.00014	0.013	16.9	0.3	2	23	494	515	494	515	0.97
4	9	3.3e-05	0.0033	18.8	3.5	1	23	523	545	523	545	0.97
5	9	5.1e-06	0.0005	21.3	1.3	1	23	550	572	550	572	0.96
6	9	0.0001	0.01	17.3	1.4	1	23	581	603	581	603	0.99
7	9	9e-07	8.8e-05	23.7	0.8	1	23	609	632	609	632	0.97
8	9	0.11	10	7.8	0.5	1	14	638	651	638	661	0.80
9	9	5.1	5e+02	2.5	4.3	1	23	669	692	669	692	0.94

Sequence Information

Coding Sequence: ATGTTGCACAATACAGGACCTTACGGTCCAAACGAGGCGCCTGTAAACATGGGAGCACCCGTTAACATGACCCCAATGAGTGGGCATATGAATATCAATCATAACATTAATAATTTGAGCAAAATAGCCCATCAAGGCATCCCAACGCCTAGCGGACACTACGACCTGCCGGACTATGCCCAATACAGCCACTCTCCTATAGGTATGCCGTCACAAATGAGTCAGTTTTCTAACTATCAACTGGGTTTCCCACAGTCTTATATGAATCCAAATGCTAACAGTATGAGTGACCTACAATTCCCAAACGGTATGTTCCCAATGAATTTAAATATACAGAACGAGCATAACGCTAGTGTGATGAATTATGCTTACGATAAGAGAATAATTGAGTCTGTCAGGCAAGAAAATTTTAAAGAACAAAATGCGCTGAAAATACCGTTAAATATACCTCAAATACCAAATAAGAATTACAACAAACACATTGGTGGCGACAACAATTATGTACATAACAGTATGTATGAAGAAAATCATCATAATCTAGATTTAAGTATGAAAACTCAGGAGAAACTACAAATAAACAGTACACGTCGGAAAAACATTGAAAACACGGTGAAATTAATTGAGAATATCCTTATCCATTCATCTAATCAGCCCAGGGATGTACCAACATTGATTTCAACTACACCAAAAAGTGCTAAAGCTGATGTACCATCAGATATTGCAGCTAAAAAAACCGTGATAGCGtcaacaaaaacattagaatcaAATACCGATTCATTAGCGTCATCACTAGCAGACTTGACAAAAAATGAACCACGAAACAACAGCACAGACGTGATGAAAGATGAACCAcgaaacaacaacaataaaccAGAAGCAACAGTAAAAGATATTAACgatgaaaaaaaagaagaaaaagatggATTGACCGACGAGGAAGAGGTTAAACCCGTAGGAATTACGCAATACTTTATAAGAGAAGACGCTGAAGTCACAACGGACAATAGTATTGTTATAAAAGTTGAGAAAGCAAGTTGGGCGGACTCCGATTGCTATATGCCGTTCTTGAAGGATAGTCACGGATTCCAGAGGGATGAACACTTGAATTATAGAATAATTGAGGGTGATACTAGCGTTGCTGAAGCTGTTGCCTCTTATAAAGAagACATAAAACCAGAGGGAGTATTTGAATGCCCGCATTGCGCCCTTCTCTTTAAACACCCAAAAAGATTTCTCATACATAACAAATGGCATACATTCGGCCTAACGAACATAAAAAGAATGGAGATCGCAAAAGTAAGAGAACAAAgaagatttgaaagaaaagaagcaAAGATTATAGAGAGGATGAATTCTAAAGAGGTTACGGATACTAAGGTGGATGGGAAGGTGTACCCATGTAAAGATTGTGATAAAGTTTTCAGTGCTAAGGGGAGCCTGAAGAATCATAGGCAAAGATCTCATCCCACCCTCATACGAGAATGTAAAATCTGTCACAAAGTGATATCAAGCTGGATGGCTCTACGAGCGCACTTAGCGACACACACAGCGGACTCGGGGCTCGGCTTTCAATGTAGCGAATGTCCTAAGAGGTTCAAATACTCTCATTCGTTGGCTAAGCACTCGGATACTCACTTGgAAAAAGTCCACGCCTGTACCGAATGTCCCAAGAAGTTCGGTTCGCAAGCTCTCCTGAAGATGCACATGAAGACCCATGAGCGTATGCTGCGGGGTGCGACGTATCGATGCACTTACTGCGCGAAAGGCTTCTTTGAATCTTACAGTTTACAGgTACACGAACGAACACATCGAAACGAAAGGCCTTACACGTGTGACATCTGTAACACCAGCTTCGGAACTAACTCTAGTCTCAAGAGACATGTCAAAGTGTCCCACAATACAGCGAAGCCCTATCAGTGCTCTGTATGCCGTCGGAACTTCTCCACTGAGTCCATCAGGGACAGACACGAGTTGAGGCTCCACGGGAACCCTGAGGACTTCAAGTTTCCATGCAAACAGTGTTCTTGCAAATATTTAAAACTGAAAGATCTTCAAAAGCACGTCTACAAAATGCATCCCAAAGGTAAAAGGAAGAAAAAGGAGAAAGAAAGCGATTCAGAATAG
Protein Sequence: MLHNTGPYGPNEAPVNMGAPVNMTPMSGHMNINHNINNLSKIAHQGIPTPSGHYDLPDYAQYSHSPIGMPSQMSQFSNYQLGFPQSYMNPNANSMSDLQFPNGMFPMNLNIQNEHNASVMNYAYDKRIIESVRQENFKEQNALKIPLNIPQIPNKNYNKHIGGDNNYVHNSMYEENHHNLDLSMKTQEKLQINSTRRKNIENTVKLIENILIHSSNQPRDVPTLISTTPKSAKADVPSDIAAKKTVIASTKTLESNTDSLASSLADLTKNEPRNNSTDVMKDEPRNNNNKPEATVKDINDEKKEEKDGLTDEEEVKPVGITQYFIREDAEVTTDNSIVIKVEKASWADSDCYMPFLKDSHGFQRDEHLNYRIIEGDTSVAEAVASYKEDIKPEGVFECPHCALLFKHPKRFLIHNKWHTFGLTNIKRMEIAKVREQRRFERKEAKIIERMNSKEVTDTKVDGKVYPCKDCDKVFSAKGSLKNHRQRSHPTLIRECKICHKVISSWMALRAHLATHTADSGLGFQCSECPKRFKYSHSLAKHSDTHLEKVHACTECPKKFGSQALLKMHMKTHERMLRGATYRCTYCAKGFFESYSLQVHERTHRNERPYTCDICNTSFGTNSSLKRHVKVSHNTAKPYQCSVCRRNFSTESIRDRHELRLHGNPEDFKFPCKQCSCKYLKLKDLQKHVYKMHPKGKRKKKEKESDSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01028622; iTF_00888595;
90% Identity: iTF_01031392;
80% Identity: -