Basic Information

Insect: Leucania comma
Gene Symbol: -
Assembly: GCA_958295575.1
Location: OY282491.1:8838826-8845820[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.61 66 5.4 2.9 1 23 398 420 398 420 0.95

2 9 1.8e-06 0.00019 22.8 0.8 1 23 467 490 467 490 0.97

3 9 0.00014 0.015 16.9 0.3 2 23 496 517 496 517 0.97

4 9 3.5e-05 0.0037 18.8 3.5 1 23 525 547 525 547 0.97

5 9 8.7e-06 0.00093 20.7 0.8 1 23 552 574 552 574 0.96

6 9 0.00011 0.011 17.2 1.4 1 23 583 605 583 605 0.99

7 9 9.3e-07 0.0001 23.7 0.8 1 23 611 634 611 634 0.97

8 9 0.11 12 7.8 0.5 1 14 640 653 640 663 0.80

9 9 5.3 5.6e+02 2.5 4.3 1 23 671 694 671 694 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.61	66	5.4	2.9	1	23	398	420	398	420	0.95
2	9	1.8e-06	0.00019	22.8	0.8	1	23	467	490	467	490	0.97
3	9	0.00014	0.015	16.9	0.3	2	23	496	517	496	517	0.97
4	9	3.5e-05	0.0037	18.8	3.5	1	23	525	547	525	547	0.97
5	9	8.7e-06	0.00093	20.7	0.8	1	23	552	574	552	574	0.96
6	9	0.00011	0.011	17.2	1.4	1	23	583	605	583	605	0.99
7	9	9.3e-07	0.0001	23.7	0.8	1	23	611	634	611	634	0.97
8	9	0.11	12	7.8	0.5	1	14	640	653	640	663	0.80
9	9	5.3	5.6e+02	2.5	4.3	1	23	671	694	671	694	0.94

Sequence Information

Coding Sequence: ATGTTGCACAATACAGGACCTTACGGTCCAAATGAGGCACCTGTAAACATGGGAGCACCCGTTAACATGACCCCAATTACTGGTCATATGAATATCAGTCATAACATTAATAATTTGAGTAAAATAGCCCATCAAGGTATCCCGACGCCTAGCGGACACTACGACCTACCGGACTATGCCCAATACAACCACTCTCCTATAGGTATGCCGCCACAAATGGGTCAGTTTTCCAACTATCAACTGGGTTTCCAACAGTCTTATATGAATCAAACAGCCAATAATATGAACGACCTACATTTCCCAAATGGTATGTTTCCTATGAATTTAAATATACAGAACGAGCATAACGCTAGTATGATGAATTATGCTTACGATAAGAGGATAATCGAGTCTGTGAGACAAGAAAACTTTAAAGAACAAAACACACTGAAAATACCGTTAAATATACCTCAAATACCAAATAAGAACTACAACAAGCACATTGGTGACGACAACGATTACGTACGTAACAGTATGTATGAAGAAACTCATCATAATCTAGATTTAAGTATGAAAACCCAAGAGAAGCTACAAATAAACAGCACACGTCGGAAAAACATTGAAAACACCGTGAAACTAATTGAAAATATTCTTATACACTCGTCAAATCAGCCCAGGGAAGTGCCACCATTGATTCCAACTGCACCGAAAAATGCTAAAGCTGATGTACCATCAGATAAAAAAACAGTGATAGCATCAACGAAAAGTCTAGATTCAAATACGTCCGACAAGAAGTCCGTTATAGCATCAACGCAAAATCTAGACACAAATACAGACCCATTAGTACCATCTCCAGCAAATTTGACAAGAAATGAaccaaaaaacaacaacaataaaccTGAAGCAACAGAAAATGAcagtaatgataaaataaaagtagataATGATGGgttatctgatgatgaagaggTTAAGCCCGTAGGAATAACGCAATACTTTATAAGGGAAGATGCTGAAGTCACAACGGACAATAGTATTGTAATTAAAGTTGAGAAAGCAAGTTGGGCAGACTCTGAATGCTTTACACCATTCTTGAAGGACAGTCATGGTTTTCAGAGGGATGAACACATGAATTATAGAATAATTGAAGGTGATACTAGTGTTGCTGAAGCGGTTGCTGCTTATAAAGAAGACATAAAACCAGAAGGAGTATTTGAATGCCCGCATTGCGCCCTTCTCTTTAAACACCCAAAAAGATTTCTCATACACAACAAATGGCATACATTCGGtctaacaaacataaaaagaatGGAAATTGCAAAAGTAAGAGAACAAAGgagatttgaaagaaaagagGCAAAGATTATAGAGAGGATGAACTCTAAGGAGGTTACAGACATAAAGGTAGATGGAAAAGTGTATCCATGTAAAGATTGTGATAAGGTGTTCAGTGCTAAGGGGAGCCTGAAGAATCATAGGCAAAGatcACATCCCACACTCATACGAGAATGTAAAATCTGTCACAAAGTGATATCAAGCTGGATGGCTCTACGAGCGCACTTAGCGACACATACAGCGGACTCGGGGCTCGGCTTTCAATGTAGCGAATGTCCTAAGAGGTTCAAGTACTCTCATTCGCTAGCTAAGCACTCGGATACTCATTTGgagaaaATCCACGCCTGTGCCGATTGTCCTAAGAAGTTCGGTTCACAAGCTCTCCTTAAGATGCATATGAAGACGCATGAGCGTATGTTACGCGGTGCCACGTACCGGTGTACTTACTGCGCGAAAGGGTTCTTTGAGTCTTACAGTTTACAGGTACACGAACGGACACATCGCAACGAAAGGCCTTACACGTGTGACATTTGTAACACTAGCTTTGGAACTAATTCTAGTCTCAAAAGACACGTGAAAGTGtCCCACAACACAGCGAAGCCCTATCAGTGCTCTGTATGCCGTCGCAACTTCTCCACTGAATCCATCAGGGACAGACACGAACTGAGGCTCCATGGAAACCCTGAGGACTTCAAGTTTCCTTGCAAACAGTGTTCTTGCAAATATTTAAAACTGAAGGATCTTCAAAAGCACGTCTACAAAATGCATCCCAAAGGCAAAAGGAAGAAAAAGGTGAAAGCAAGCGATTCGGAATAG
Protein Sequence: MLHNTGPYGPNEAPVNMGAPVNMTPITGHMNISHNINNLSKIAHQGIPTPSGHYDLPDYAQYNHSPIGMPPQMGQFSNYQLGFQQSYMNQTANNMNDLHFPNGMFPMNLNIQNEHNASMMNYAYDKRIIESVRQENFKEQNTLKIPLNIPQIPNKNYNKHIGDDNDYVRNSMYEETHHNLDLSMKTQEKLQINSTRRKNIENTVKLIENILIHSSNQPREVPPLIPTAPKNAKADVPSDKKTVIASTKSLDSNTSDKKSVIASTQNLDTNTDPLVPSPANLTRNEPKNNNNKPEATENDSNDKIKVDNDGLSDDEEVKPVGITQYFIREDAEVTTDNSIVIKVEKASWADSECFTPFLKDSHGFQRDEHMNYRIIEGDTSVAEAVAAYKEDIKPEGVFECPHCALLFKHPKRFLIHNKWHTFGLTNIKRMEIAKVREQRRFERKEAKIIERMNSKEVTDIKVDGKVYPCKDCDKVFSAKGSLKNHRQRSHPTLIRECKICHKVISSWMALRAHLATHTADSGLGFQCSECPKRFKYSHSLAKHSDTHLEKIHACADCPKKFGSQALLKMHMKTHERMLRGATYRCTYCAKGFFESYSLQVHERTHRNERPYTCDICNTSFGTNSSLKRHVKVSHNTAKPYQCSVCRRNFSTESIRDRHELRLHGNPEDFKFPCKQCSCKYLKLKDLQKHVYKMHPKGKRKKKVKASDSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01027659;
90% Identity: iTF_01031392;
80% Identity: -