Mlal023520.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mythimna lalbum
Gene Symbol
sip1
Assembly
GCA_949319445.1
Location
OX439365.1:6581555-6592445[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.6e-57 1.4e-53 183.3 4.2 1 275 400 656 400 656 0.96

Sequence Information

Coding Sequence
atgtcGGACGACGAAGTAATGCGTTTTGAAATCACCGACTATGATTTGGATAATGAATTTAATCCAAATAGAGCCAGAAGAGCCAAGAAAGAGCATCAGATTTACGGTGTCTGGGCTAAGGACAGTGATGAGGAAGATAATGAAGACAATGTCAGACAAAGGACTCGCAAACAGAAAGACTTCACGGCACCCATCGGGTTTGTGGCTGGAGGCGTGCAACAGGCTGGCAAGAAGAAGGAAGAAAGTAAAGAAATAGAATCATCAGAAGCCTCTACATCCCGCCCCAAGTTTGCTGCCGACAGTTCTGATGAAGAAGAACAAAATGCGCCTGATGCAAGTGAGACTGCAGGCATCCGGAGACAGGGACAGGGCATGAGACCGGTGAACCTTGGAGGCAATGTGGGGACCTGGGAGAGGCATACCAAGGGTATTGGAGCTAAGCTGTTGTTGAAGatGGGTTACCAACCAGGCATGGGTTTAGGTAAAGATCTGCAGGGTATCTCAGCACCTGTAGAGGCCACCGTCAGGAGAGGAAGGGGAGCTATTGGCGCCTATGGACCTGAGAAAGCAGCTCAAAAAGCCAAAAAAGAAGAGGAGCTCCGTCGCCTGAAAGAGAAAGAAGATGAGAAAGGGACAAAAGAAAAGAACTACAACTGGAAGAAGTCGCACAAGGGGCGCTACTTCTACCGCGATGCTGCTGATGTCATACAAGAGGGTAAACCCACGATGCATACTATTACCAGCAACGAACTCTCCCGCGTCCCTGTAATAGACATGACGGGCAAGGAGAAGCGCGTCCTCAGCGGGTACCACGCGCTGCgagccgccgcgccgcgcttcGAGCACGAGCCGCGCAGGAAGTGCGACAACTTCGCCGCGCCGCAGCTCGTGCACAACCTGGAGCTCATGGTGGAGTGCTGCGAGCAGGTAGTGTGCTGTGTGCTAGATGAGCAGGGCTCGAAGTGCGACAACTTCGCCGCGCCGCAGCTCGTGCACAACCTGGAGCTCATGGTGGAGTGCTGCGAGCAGGACATAATCCAAAACGCCCGCGAGCTGCAATCAGCGGAAGACGAGatcgtggtcttagaacgcgACCTAGAAGAATGCAATATAAAGCTGTCGGAGCAAGACAAGGTGATCGACAAGGTGGAAGGTATCCTGCAGCGCGTGGAGATGCTCAACAAGCCCGATGTGTCGCTGGAGCGCGCGCACGACGTGCTGGCCGAGTTGAAGGATACCTACCCAGCGGAATACGAGTTGTTCGGCCTAGGCACCATCGCGGGCAACATCGTGAGCCCGTTGCTAAGTGCCCTGATCGCGCCGTGGGAGCCGCTGACAGCTCCCGACGAGCCCATACCGACCTTCCTGAAGTGGAGGAAGCTACTCACCGAGGAGGCTTATAATAGTCTTCTGTGGCAACACTTTGTGCCGGCGCTTACTACTGCTGCTGAGGCGTGGAACCCACGCATGCCCACCCCGATGCTGCGCGCCGTGTCGGCGTGGCacgcggcgtcgcccgcgtggCTCACGCGCGCGTGCGTCACGCGCTGCGTGGTGCCGCGCGTGTTAGCCGCCGTGCGCGCCTGGGACCCCACCAACGACACGCAGCCGCTGCACCAGTGGGTGCTGCCGTGGCATGACATGGCAGGGGAAGCCCTAGCCAGCGCTGTGTACCCGCTGATCCGCTCTCGCCTGGCGGCGGCGCTGGCGGCGTGGCACCCCGCCGACGGGTCCGCGCGCGGCGTGCTGCGCGCGTGGCGCGGCGCGTGGGGCCCGGCGCTGCAGGCCATGCTGCACCAGCACATCGTGCCCAAGCTGGACCACTGCTTGCAGCACGCGCCGCTCGAGCTGGTCGGCAGGGAGAATACGGCGTGGCTGTGGTGCGTGGAGTGGCTGGAGCTGCTGGGCGCGGCCACGGTGGCGGCCAtggcggcgcgcgcgctgcTGCCGCGCTGGCTGGCGGCGCTGGCCGCGTGGCTCAACACCAACCCGCCGCACGCCACCGTGCTCAACTCCTACACGGACTTCAAGAAAATGTTCCCAGAAGAGGTCCTCAAAGAGCCTGCAGTACGTGACGCCTTCCGCAAAGCCTTGGACATGATGAACAGAAGTGCCGACATAGACTCTGTGGAACCTCCTCCTCCCCCTCGTTTCACCATGCCAGAAGTGAAGGAAACATCCCGTATAACTGAAGTCTTGGCCACCGCTACTCAAGCCAAGAGCTTCTCAGAATTACTTGAAAGTAGGTGTATAGAGAAAGGAATTACTTTTGTGCCCATAGCAGGCAAGACAAGAGAAGGAAGGCCTCTGTACAAAATTGGAAATCTTCAATGCTATGTCATAAGAAATGTGATCATGTTTTCTAATGATAACGGGAGAAGTTTCAATCCTATTAGTATGGATAAGTTGTTGAGTATGGTGGAGGATTGA
Protein Sequence
MSDDEVMRFEITDYDLDNEFNPNRARRAKKEHQIYGVWAKDSDEEDNEDNVRQRTRKQKDFTAPIGFVAGGVQQAGKKKEESKEIESSEASTSRPKFAADSSDEEEQNAPDASETAGIRRQGQGMRPVNLGGNVGTWERHTKGIGAKLLLKMGYQPGMGLGKDLQGISAPVEATVRRGRGAIGAYGPEKAAQKAKKEEELRRLKEKEDEKGTKEKNYNWKKSHKGRYFYRDAADVIQEGKPTMHTITSNELSRVPVIDMTGKEKRVLSGYHALRAAAPRFEHEPRRKCDNFAAPQLVHNLELMVECCEQVVCCVLDEQGSKCDNFAAPQLVHNLELMVECCEQDIIQNARELQSAEDEIVVLERDLEECNIKLSEQDKVIDKVEGILQRVEMLNKPDVSLERAHDVLAELKDTYPAEYELFGLGTIAGNIVSPLLSALIAPWEPLTAPDEPIPTFLKWRKLLTEEAYNSLLWQHFVPALTTAAEAWNPRMPTPMLRAVSAWHAASPAWLTRACVTRCVVPRVLAAVRAWDPTNDTQPLHQWVLPWHDMAGEALASAVYPLIRSRLAAALAAWHPADGSARGVLRAWRGAWGPALQAMLHQHIVPKLDHCLQHAPLELVGRENTAWLWCVEWLELLGAATVAAMAARALLPRWLAALAAWLNTNPPHATVLNSYTDFKKMFPEEVLKEPAVRDAFRKALDMMNRSADIDSVEPPPPPRFTMPEVKETSRITEVLATATQAKSFSELLESRCIEKGITFVPIAGKTREGRPLYKIGNLQCYVIRNVIMFSNDNGRSFNPISMDKLLSMVED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00450133;
90% Identity
iTF_00041793; iTF_00040836; iTF_00039832; iTF_00042653; iTF_01064682; iTF_01533068; iTF_01028312; iTF_01031162; iTF_00888284; iTF_01533951; iTF_01026208; iTF_00851820; iTF_00850762; iTF_00850761; iTF_00300235; iTF_00850763; iTF_01230603; iTF_00951855;
80% Identity
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