Mlal025163.1
Basic Information
- Insect
- Mythimna lalbum
- Gene Symbol
- -
- Assembly
- GCA_949319445.1
- Location
- OX439367.1:6432645-6432989[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6 6.2e+03 -2.0 0.2 35 42 3 10 1 11 0.76 2 2 5.9e-13 4.2e-10 40.2 0.0 3 39 17 53 15 58 0.91
Sequence Information
- Coding Sequence
- ATGGTTCGCCACTACCAAAGGAAGACAGAACGTGCCAAATGGAGCTTGGAGGATATGGAAGCAGCCGTAAAAAATGTGGCTAGTGGCAGATTAAGCTGTAAACGGGCCGCTCTTGAGTACAATGTGCCACGATCAACTTTGCAGCGAAAACTCGAGGAGTACAAATCAAAACAGCACTTATCACCAACAAAACTAGGTAGTTTTAGACCAATATTTTCAGCTGCTCAAGAGGAAGAGTTAGCTTCATATATTAAAGACATGGAAGGTAGATTGTTTGGTTTGTCTCCAAAAGAAGTTCGTCAGCTGGTCTATCAATTGGCAACAAAAATTAGCATTCCAACATAA
- Protein Sequence
- MVRHYQRKTERAKWSLEDMEAAVKNVASGRLSCKRAALEYNVPRSTLQRKLEEYKSKQHLSPTKLGSFRPIFSAAQEEELASYIKDMEGRLFGLSPKEVRQLVYQLATKISIPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01246806;
- 90% Identity
- iTF_00831101;
- 80% Identity
- -