Mimp036173.1
Basic Information
- Insect
- Mythimna impura
- Gene Symbol
- -
- Assembly
- GCA_905147345.1
- Location
- LR990356.1:25637873-25657302[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.081 13 8.3 8.6 1 23 272 294 272 294 0.96 2 12 1e-05 0.0016 20.5 1.9 2 23 302 323 301 323 0.95 3 12 0.088 14 8.2 0.3 1 23 327 349 327 349 0.97 4 12 0.00011 0.017 17.3 2.8 1 23 354 377 354 377 0.97 5 12 0.0018 0.28 13.5 0.2 3 23 383 404 382 404 0.96 6 12 0.011 1.8 11.0 0.1 2 20 420 438 420 440 0.94 7 12 0.0011 0.17 14.2 0.1 3 23 454 475 454 475 0.95 8 12 0.001 0.16 14.2 1.3 2 23 498 520 498 520 0.96 9 12 0.035 5.5 9.4 2.1 2 23 532 553 531 553 0.96 10 12 0.00037 0.058 15.6 7.1 1 23 559 581 559 581 0.99 11 12 3.6e-06 0.00056 22.0 0.2 1 23 587 609 587 609 0.98 12 12 0.00092 0.14 14.4 0.9 1 23 615 638 615 638 0.98
Sequence Information
- Coding Sequence
- atggGAGACGTTCAAGTTTGCCGTATTTGCCTAAATATGAATGTTAAAATGCAGGACCTGTCGGTATACCCTTTAGTGTCATATTTTGCATCATTCATGATAGAAAGTAAGCCTTTATACACGAGTTTGCCACCATATGCCTGCTATGAATGTGCAGCTCTGGTGaagaagttttatttatttagagaaAAGTGTCTGCAAAGTCAGGGAATACTGTGTGGAATCATTGATGACTGTGGGAAGTTAACCCATCCAGCAATAAAGTCAATCCCTCGGAAAAATCTCCTTACAATTACAAATGTCACTAATATCAGCATAGAACAAGATAGTGCAACAGATTGTATCAACATAGAAACACCGAAATTTGTGGTTGAAGTTATCAAAAAGGAAGATCATGATGACATTGATATTCCTGATCATGTCAGTCCTGATAATAGTTCtagtggtgatgatgatgatgatgaatgtgcCAAGAAAGATAAGAAGGAAATACATGAAGTTGAAAAGGTAGAGATTTCTGTGAAGATGGTCCTTGAGGAGGAATCTGATAGTGTTGAATTTCCTGATACTACAGTTGACAAGCCAAAATTGCCGATCAAAAAGACTAAAACAACTCAGTCCAAGAAGAGAGTAAGGGCAAAGAGAACTCGTACTGCAGTGGCTAAGAAGAGTTCAGCCAGCAAAGTCAAGAAGAACGACACAGAACATGAAGATATGACGGATGATTTAATCAACATTATTACTCTATCGCTCGAGGACCAGATAGAAGAGATGAACAAACGCAAGCAGTCTTCCAACTACCTCGACTGTCCGTATAAATGCCACCAGTGCTACAGGGGCTTCAACAACACTCACGCTTGGAAACATCACCTCACTAAACACTCCCCGAACCTTGGTGACATAGAGTGCAAAATCTGCAAGTACAGGTTTAAGACGAAACGAAATCTTCAAAGGCATGCTCTGAACCACGGGAAGAGATATGTTTGTAATTTATGTCCGTACAACTCTAGCAATATAACAACTGTGAAGCAGCATCAAGGGTCACATAAGGGAGTCACACATAAATGCAAATATTGCGATGAAGTTTTCAACGTAAGAACGACGTACGTGAGTCACATGCGAATCAAGCATCCATCAGAAAATATCTGCGGGTTTTGTGGGTACTCCTTCTATAGCAAGCAGGGGCTCGTCGTACACAAGAATATGATGCACAAGGACGTTGAAGCAAACCAAGAAGAGAACACAGAAGAAGGTCCATATTGTGAACAGTGTGATGTCAAGTTCATATCGACGGAGGCGTACAAGAGACACATGGTGATGTCAGTCAAGCACACGCGGACCACACACTCTATGAACGGGTGTCGTGTTTGCGGTGAGATATTCACGGATCCTGAAGAGTTACGTCTCCACAATCGTGAAGAGCATCCTAAGAAACAACCGAAGCACTACAACTACCAACGGAAGAGTCAAGTTCGGACCAAATGGCCTGCCAAGTGTCAACATTGTCCGGAAGAATTCGCCACCCCTCGCTCATACTGGAGCCACTACCGACTGAAGCACCCCGACAAGTACGAGCCGGTGCGGAAGAATTGCGTCTGTGATATATGCGGCAAGAGATATGCGTGCAACGCCGTCCTAGAGCTGCACAAGCGCACACACTTCGGCGAGCGCCCCTACAAGTGCTCGCACTGCGACAAGGCGTGCTTCTCCGCGCACGACCTGCGCGTGCACCAACAGAAGCACTCGGACAGCCGCCCCTTCCCCTGCGGCGTGTGCCAGCAGGCCTTCAAGCGGAAGGAGGCGCTGGAGAGGCATCTCAAAATCCACTCCGGCGATAACCCATACAAATGCGAGATCTGCGGCGTAGCATTCGCCAAGTCGTGCACGAGGACCCTTCACGTGCGAACCGTACATACCAAGGAACCACCTCCACCGCGCAAACGACGGAACAAGGTCAACAAATAA
- Protein Sequence
- MGDVQVCRICLNMNVKMQDLSVYPLVSYFASFMIESKPLYTSLPPYACYECAALVKKFYLFREKCLQSQGILCGIIDDCGKLTHPAIKSIPRKNLLTITNVTNISIEQDSATDCINIETPKFVVEVIKKEDHDDIDIPDHVSPDNSSSGDDDDDECAKKDKKEIHEVEKVEISVKMVLEEESDSVEFPDTTVDKPKLPIKKTKTTQSKKRVRAKRTRTAVAKKSSASKVKKNDTEHEDMTDDLINIITLSLEDQIEEMNKRKQSSNYLDCPYKCHQCYRGFNNTHAWKHHLTKHSPNLGDIECKICKYRFKTKRNLQRHALNHGKRYVCNLCPYNSSNITTVKQHQGSHKGVTHKCKYCDEVFNVRTTYVSHMRIKHPSENICGFCGYSFYSKQGLVVHKNMMHKDVEANQEENTEEGPYCEQCDVKFISTEAYKRHMVMSVKHTRTTHSMNGCRVCGEIFTDPEELRLHNREEHPKKQPKHYNYQRKSQVRTKWPAKCQHCPEEFATPRSYWSHYRLKHPDKYEPVRKNCVCDICGKRYACNAVLELHKRTHFGERPYKCSHCDKACFSAHDLRVHQQKHSDSRPFPCGVCQQAFKRKEALERHLKIHSGDNPYKCEICGVAFAKSCTRTLHVRTVHTKEPPPPRKRRNKVNK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00906431;
- 90% Identity
- iTF_01029520;
- 80% Identity
- -