Basic Information

Insect: Mythimna impura
Gene Symbol: -
Assembly: GCA_905147345.1
Location: LR990343.1:17034856-17052353[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 7.5e-05 0.012 17.8 0.4 1 23 483 505 483 505 0.98

2 8 1e-06 0.00016 23.7 1.4 1 23 511 533 511 533 0.98

3 8 9.3e-06 0.0015 20.7 0.6 2 23 542 563 542 563 0.98

4 8 1e-05 0.0016 20.5 0.7 1 23 569 591 569 591 0.99

5 8 1.1e-07 1.7e-05 26.7 2.1 1 23 597 619 597 619 0.98

6 8 6.6e-07 0.0001 24.3 1.3 1 23 625 647 625 647 0.97

7 8 0.00011 0.017 17.3 7.3 1 23 653 675 653 675 0.97

8 8 8e-05 0.013 17.7 0.9 1 22 681 702 681 702 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	7.5e-05	0.012	17.8	0.4	1	23	483	505	483	505	0.98
2	8	1e-06	0.00016	23.7	1.4	1	23	511	533	511	533	0.98
3	8	9.3e-06	0.0015	20.7	0.6	2	23	542	563	542	563	0.98
4	8	1e-05	0.0016	20.5	0.7	1	23	569	591	569	591	0.99
5	8	1.1e-07	1.7e-05	26.7	2.1	1	23	597	619	597	619	0.98
6	8	6.6e-07	0.0001	24.3	1.3	1	23	625	647	625	647	0.97
7	8	0.00011	0.017	17.3	7.3	1	23	653	675	653	675	0.97
8	8	8e-05	0.013	17.7	0.9	1	22	681	702	681	702	0.95

Sequence Information

Coding Sequence: ATGTGTGAATGGCTATCGCATGGAGAGTGGTGCGATGTGAAACTCCTGTGCGGCGGGCGCGCATTCAGCGCACATCGAGCCGTGCTCGCTAGTGTTAGCACTTTTCTCAGACGTCTTCTCCTATCTTGTCCCACAGACGAGTCACCGACTTTTATCGTTTTGCCAGATTTTGACCTCGAGGCTATGTCGTCTGTCctttattacatttataatgGAGAAGTTATTGtacaaaaagataaaattgaaatgtttCTGGACATTGTAAAAgctatgcaaatatttgttgaCAGTCAATATTTGCCGCAAATTTCGGATACGTtggattataataattttgatttaagttttcacttTGAATCTGATTTATCGAAAAGGAATATATTCACATTAGGATTTGAAGGCTGTAGAGATcaacaatatataaatataaagaaagGCAAGATAATCCAGGATGAATTACAATATTCAGCTAGCAACGAAGATTGCAAAGATAAGCTGGTACGTAGTCAGAATCCAAGTGGAGAGCGTAAGTCTTCTTTAGGAAATCTGAAATCGCCGCTTAGAGACCGACAAAGGAACTCTTTTCtacgtgatttatttatcgagACATATCCTCGAAACGGTAATGTTAACGGTCTGACGGCAGGCGTGCTAGCAATATCAAATGAATGCTATCGTACTCCGGCATCTGTGCTCTTGACGAATGCAAATGGCAAACATCTCAGCGCCGACGGTTCACTCTTAGAACCATATAAAAAAACGAATGAGCACATCAGTCATTCGCCTACAGTATTTCACCTTCGTCAGCAGCAGCAATGCACTCGAGATGAACCAGATTACGGTGAAACTAACAAAGCGTTGTATGACCAATCTTGCCTAAAAGTTTGTGCGGCTGAGAAAAGTAAAAACACACATGCCTTTGACAATGACACAAATAATTTACCGATGAATATATTAATGAACCATGTGCCTATGACAGCAAATTCTTTACTTCAACTGGGGTTACCTGATCAGATTTTGTCCCGATTTTATCTTCCTTCCTTGGACTTTAGTATCGCACCATCAGTGTTCGATTCGATAAAACCGATGCCAGTTCATAGGAACAGATCGGTCATTGACAATGCAAGTGATGAAAGTAGGAAAGAAACAGACGTGACAACATCTGCTAGAGTTACTATTTTAAATCATGTATTAGAGAGTCCGTGGAGCCCTCGGATACCAAACAACTACAAACCATTTCGTAGAAAAACTGATGGTCCTTTGCAGTCACCGTCGTCCAAACAAAAAGTTGTGAACGAAAATGTTTTAGTTAACGATACCAATAACAATGTTCCAAAGCCAAATCTATCATCAATTACGGATGCTATCAGTGAAACGACGCCTGCCAGTAGTGTGTCGGCAAAATCGACAACGGTTTCATGTGCACCGAACACTCGGAGAGATGAATTTAAGTGCACTCCTTGCAATCAGGTGTTTATGAGTAGCGATTCCCTGGCGGTACACATGCGGCGACATTCAGCGACAGCGCGGTACTCATGCGGCGAGTGTGGTAAGACCTTCTCGCAGCTGCGCAACTTCAAGTACCACATGTCCATCCACCGCGGCACCCGCGAGTTCGCCGCCACCTGCACCGTCTGCGGCAAGTACTTCAACGACAGAGGATATCTCAGCAGCCACATGAAGATTCATCGGAACCGTAAAGAGTACAAGTGCACTCTCTGCCCCAAGTCCTTCAACCAACGCGTTGCGTACAACATGCATGTGAGAATCCATAcagGTGTAAAGCCGCACGTGTGCGAAGAATGCGGCAAGGCGTTTTCTCGCAAGATGTTGCTGAAGCAGCATCAGCGCACGCACTCCGGCGAGCGCCCGTATGCGTGCCCGCACTGCGACAAGCGGTTTGCGGACCGCTCCAACATGACGCTACACTTGCGGCTACACACAGGAGTAAAGCCGTTTTCCTGCACACTTTGCCCGAAGTCTTTCACAAAGAAGCACCACTTGAAGTCGCACCTGAACTTTCACACCGGCTCGAAGCCGTACTCTTGTCCTCGCTGCAAGCTCGCCTTCACTCAATCCTCGAACATGCGGACGCACCTCAAGAAGTGTCGCGCTCCTGAACCTGTGCCCACTGAGACTCCTCAGCAAACCGGATGTTAA
Protein Sequence: MCEWLSHGEWCDVKLLCGGRAFSAHRAVLASVSTFLRRLLLSCPTDESPTFIVLPDFDLEAMSSVLYYIYNGEVIVQKDKIEMFLDIVKAMQIFVDSQYLPQISDTLDYNNFDLSFHFESDLSKRNIFTLGFEGCRDQQYINIKKGKIIQDELQYSASNEDCKDKLVRSQNPSGERKSSLGNLKSPLRDRQRNSFLRDLFIETYPRNGNVNGLTAGVLAISNECYRTPASVLLTNANGKHLSADGSLLEPYKKTNEHISHSPTVFHLRQQQQCTRDEPDYGETNKALYDQSCLKVCAAEKSKNTHAFDNDTNNLPMNILMNHVPMTANSLLQLGLPDQILSRFYLPSLDFSIAPSVFDSIKPMPVHRNRSVIDNASDESRKETDVTTSARVTILNHVLESPWSPRIPNNYKPFRRKTDGPLQSPSSKQKVVNENVLVNDTNNNVPKPNLSSITDAISETTPASSVSAKSTTVSCAPNTRRDEFKCTPCNQVFMSSDSLAVHMRRHSATARYSCGECGKTFSQLRNFKYHMSIHRGTREFAATCTVCGKYFNDRGYLSSHMKIHRNRKEYKCTLCPKSFNQRVAYNMHVRIHTGVKPHVCEECGKAFSRKMLLKQHQRTHSGERPYACPHCDKRFADRSNMTLHLRLHTGVKPFSCTLCPKSFTKKHHLKSHLNFHTGSKPYSCPRCKLAFTQSSNMRTHLKKCRAPEPVPTETPQQTGC*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00622996;
90% Identity: iTF_01030400;
80% Identity: iTF_01026489;