Mimp041527.1
Basic Information
- Insect
- Mythimna impura
- Gene Symbol
- Rhobtb1
- Assembly
- GCA_905147345.1
- Location
- LR990360.1:5819500-5851595[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.5e-08 7.9e-05 24.6 0.2 3 44 114 154 112 175 0.84 2 3 1.2e-06 0.00097 21.1 0.4 47 109 252 313 243 314 0.83 3 3 4.5e-18 3.7e-15 57.8 0.1 7 108 339 439 334 441 0.92
Sequence Information
- Coding Sequence
- ATGTACAGAGATGAAACCTACTTGAACTACTGTAAGGATCGCAGCCCTTTTATCAGGGCACCAAGAAAAAGTGACCTCGTAATGCCAGACCAAGGGCGCGCCTTGGCTCATGAGTTCGGCATCTACTACTACGAGACTTCGGTCTTCACTTACTACGGAGTCAACGAGGTGTTCGAGAACGCCATCAGAGCTGCCCTGATAGCCAGGAGGCAGCAACGGTTCTGGATGACCAATTTGAAGAGGGTGCAGAGGCCTCTTTTGCAGGCGCCATTCCGCCCTCCTCGTCCAATGGAGCCCGAGGTAGCCGTGGTGAACAGCACCTACCTTGAGAACATGACCACTCTCATGCGACAACAGTATTTCTCGGACATGGTGATCATATGTGGCGCGAAAGGCTTCCCCGTCCACCGGTTTATGATGGCGGCAGCATGCGAGGCCTTCCACCGCCTACTGACTAACGACTGCGTCAGTCTATCTGCTGAACTCGCCAGGAGTTCCAGCGAGAGCAGCATGGTGAGCAGTATGGGTGAGGCGACCACCGGAGAATTTAATGAGGACACGGAGTACTTGATACGTCAGGACCAGGCGAAGCAGATGAGGGTATGGGATCAGATCAAGCGTCGGTCTTCATGTCAGATCCTCCCGCTGAGCGACAGCTGTAAGAAGCCTCCGGACTTATACAGAGAGGTCAACCACCCCGCTATCATCTCTATCAGAGTTGTTAAGTGCGACAAGATCCAACACGCGACGTCTCAAACACAAACCATAGTGACGATGAGCAAGTTAATCTCCCAAACGGTTATGCAAGAGATCGTCAACTTCATCTACACCGGGGCCTTGGACAGCAGCGCCTTCAAGCAGCAGGAGATCAGACAGGCGGCAGAGCTGCTCGGCTTCCATGAGCTCACCAAGCTCAGTCAGTTCATCCTCGATCAGCACCTGCTGTTCGACAAGGGATTCATGCTGCAGTTCCATACGCCTCTAGGAGCCCGCCTCCGCGACATGTATGTGGAACGTGCTCTATTCGCCGATGTAACCTTCGACCTGGACGACGGCATCCACCTCGCGCACCGCGCCGTGCTCATGGCTCGCTGCGACCCCATGAAGGCCATGTTCCAGGGCCACTTCCGAGAGAGTACCTCCCGGGTGATTTCCTTCCCCGGAGTAAAAATGTACGCATTCCACATTTTGCTCAGCTACATCTACAGCGACAAGATCCCAGCTGTTGATCCTACGAGGTGCCTGGAACTGCTGGAACTGGCCAACAGACTGTGCATGAACCGCCTCGTGAACCTCGTGGAGGCTAGAGTCATAGACCAGCTGCAGCAAAGTGACAGAGTGTGTGGTGATGATGACCAAGTCGTCGAGATAGCTCTGTCACTATTGGAGCCTGTTAAGTTGCACAACGCACACAACTTGGCGGACTGGTGCATGTGGCGCCTGTGCGGCGCGTACGACCGCGTGTGCCGCGCGCGCCACCTCACGCAGCCCTCCAGGGACTACCTCTCCGACAACCGCTGGCCGCCTGTCTGGTACGTGAAGGAGTTCGACTACTACCAGAAGTGCGTGAATGAGCAGAGCAAGGAGCAGAAGGAGCTGCGACTCACCACCTCGCTGCAGGCCAACCAGCAGACCGGCTGTCTGTGCTTCACTAATCCGAAATGTCACATTCATAACATCGTTGGTGTGTGTATAGGCAAGGTCCGTCGCGACAGCGAGCCCGGGCCAGACGTGACGACGGCGCTGTGCCGCTCGGGCGACGCGCCGCACGTGCCGCACCCCACACTCAACCAGCACCAACCGCCCCTCTGA
- Protein Sequence
- MYRDETYLNYCKDRSPFIRAPRKSDLVMPDQGRALAHEFGIYYYETSVFTYYGVNEVFENAIRAALIARRQQRFWMTNLKRVQRPLLQAPFRPPRPMEPEVAVVNSTYLENMTTLMRQQYFSDMVIICGAKGFPVHRFMMAAACEAFHRLLTNDCVSLSAELARSSSESSMVSSMGEATTGEFNEDTEYLIRQDQAKQMRVWDQIKRRSSCQILPLSDSCKKPPDLYREVNHPAIISIRVVKCDKIQHATSQTQTIVTMSKLISQTVMQEIVNFIYTGALDSSAFKQQEIRQAAELLGFHELTKLSQFILDQHLLFDKGFMLQFHTPLGARLRDMYVERALFADVTFDLDDGIHLAHRAVLMARCDPMKAMFQGHFRESTSRVISFPGVKMYAFHILLSYIYSDKIPAVDPTRCLELLELANRLCMNRLVNLVEARVIDQLQQSDRVCGDDDQVVEIALSLLEPVKLHNAHNLADWCMWRLCGAYDRVCRARHLTQPSRDYLSDNRWPPVWYVKEFDYYQKCVNEQSKEQKELRLTTSLQANQQTGCLCFTNPKCHIHNIVGVCIGKVRRDSEPGPDVTTALCRSGDAPHVPHPTLNQHQPPL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01094177; iTF_00425575; iTF_01093256; iTF_01532235; iTF_00301324; iTF_01084396; iTF_01085519; iTF_00123504;
- 90% Identity
- iTF_00042785; iTF_00041922; iTF_00041020; iTF_01094177; iTF_01093256; iTF_00375443; iTF_00712051; iTF_01118452; iTF_01192852; iTF_01028440; iTF_00758394;
- 80% Identity
- -