Mimp041904.1
Basic Information
- Insect
- Mythimna impura
- Gene Symbol
- -
- Assembly
- GCA_905147345.1
- Location
- LR990360.1:14513952-14514611[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-07 5.6e-05 24.6 0.1 12 42 10 39 6 41 0.87
Sequence Information
- Coding Sequence
- ATGACTGACAAACAGAAGGCCATATTAGTTAGAAAAGGAGCCTCAATTTCAGCTGCAGCCAGGCAGTACAATATTCCACGGTCAACGTTGGACGACAAAATACGCGGCCGCTATTCTATTGAATGTTCGAAAGGACCTGCTACAGTTTTGTCAAAAGAAGAAGATCATTTAAGAAGATGGTTAATTTTTATGGCAGATAGTGGTTTTCCTGTAAGTAAGGCGCAATTGTTGGATAGCGTaagtttacttattaaaaaattgaaGCGAGAAAACCCTTTTAAAAATGGCAGACCAGGTCGTCACGGGTTTGAAGCCTTCATAAAGCGGCACCCTGAAGTAGGCCAGCGAGTGGCCCAAAATCTGACGCAAACCCGTGCTTTAGTTCAGGAAAGCAGTTTAAGAGCGTGGTTTAAAGAAGTGGAAGAGTATTTAATTATGGCACACCTCGAAGAAGCAATTAAAGACCCAAGAAGGATATTTAACTGTGATGAAAGCGCTTTCTTTTTTTCACCAACAAATAACAGAGTTTTAGCAAAACGAGGTGCCAAAAATGTTTATAACATTATTCCCAGTAGTGAAAAAGAGTGCGTGACAGTCTTAGTCACGGCAAATGCAGCAGGTAAATTGGCACCTCCAATGGTGTTGTTTAAACTGAAATAA
- Protein Sequence
- MTDKQKAILVRKGASISAAARQYNIPRSTLDDKIRGRYSIECSKGPATVLSKEEDHLRRWLIFMADSGFPVSKAQLLDSVSLLIKKLKRENPFKNGRPGRHGFEAFIKRHPEVGQRVAQNLTQTRALVQESSLRAWFKEVEEYLIMAHLEEAIKDPRRIFNCDESAFFFSPTNNRVLAKRGAKNVYNIIPSSEKECVTVLVTANAAGKLAPPMVLFKLK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01025989;
- 90% Identity
- iTF_01085093;
- 80% Identity
- -