Mimp012167.1
Basic Information
- Insect
- Mythimna impura
- Gene Symbol
- -
- Assembly
- GCA_905147345.1
- Location
- LR990341.1:26774454-26775377[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-07 0.00015 23.1 0.0 11 37 3 29 1 35 0.91 2 2 3.8 1.3e+03 1.0 0.0 22 30 120 128 105 132 0.77
Sequence Information
- Coding Sequence
- ATGCGTAGTGTCCTAAGCAAAGTAATGGGTGTTAATGAGGCATCCAGAAACTTTGGCATACCGTCTCGAACTCTAAGAAGACACATTTTATCAGGAAAATCAAAGGGCCCTCTAGGACGCAAACCAGTATTTTCTGtagaatatgaaaaaaaactggTTGCCCATATAAAGAAATTGGAAAAAGTTGGATTTGCCCCTGACAGAAAGGATGTAAAAGAAATGGCATTTCAACTAGATAagaaacttaatattaaaaacccATTTTCAGCAAGTTCAGAATCAGCTGGAAATGTATGGTTTTTGGGGTTCATGGCTCGCAACTCAGAATTAAGCCAAAGAAAATCAGAAGGCTTGTCACTTGCTCGAGCTTATGGAGTTAATAGAAAAGATATACAGGATTTTTTTGATTTACTAGCCAAAATCtacgaagaaaatgattttgCAAATCACCCCGAAGATATTTTCAACATGGACGAGTCCGGCATACAGGTGAACAACAAGCCAGGAAGAGTAATTGCCACAAAGGGAGCCAAAGATGTCTACACGCTCACTAGCTCTGAAAAGGGTGAAAACGTAACGGTCATTGCTTGCTGTAATGCTCAAGGTAACTTCCTTCCCCCTGTTTTAATCTATAAGGGTACTTACAGCAAACCACAATTTTCCGAAGGTCTTCCCCCAGGATCACAGGTTTTCATGAACAAAAAGTCTTCTTATATAAATACAGATCTCTTTATGCAATGGTTTGAAGAAGTGTTTCTACGTCACAAGAGTCCTCGAAAAACATTGTTAATATTAGATGGTCACAGCTCGCACAGTAACAATATTCGCCTACTGGAAGTGGCTAAAGAAAATGATGTTATTCTTTTGTGTCTACCAAGTCACACTATGCATGCTCTGCAGCCTCTTGATAGAGCCTCTTTTTAG
- Protein Sequence
- MRSVLSKVMGVNEASRNFGIPSRTLRRHILSGKSKGPLGRKPVFSVEYEKKLVAHIKKLEKVGFAPDRKDVKEMAFQLDKKLNIKNPFSASSESAGNVWFLGFMARNSELSQRKSEGLSLARAYGVNRKDIQDFFDLLAKIYEENDFANHPEDIFNMDESGIQVNNKPGRVIATKGAKDVYTLTSSEKGENVTVIACCNAQGNFLPPVLIYKGTYSKPQFSEGLPPGSQVFMNKKSSYINTDLFMQWFEEVFLRHKSPRKTLLILDGHSSHSNNIRLLEVAKENDVILLCLPSHTMHALQPLDRASF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00677483;
- 90% Identity
- -
- 80% Identity
- -