Mlon009069.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mystacides longicornis
Gene Symbol
-
Assembly
GCA_963576905.1
Location
OY756423.1:27665974-27680056[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0002 0.02 16.6 0.3 3 23 132 152 131 152 0.97
2 16 3.7e-06 0.00038 22.0 0.7 1 23 158 180 158 180 0.98
3 16 1.9e-06 0.00019 22.9 2.4 1 23 186 208 186 208 0.99
4 16 9.5e-05 0.0096 17.6 2.7 1 23 223 245 223 245 0.98
5 16 1.4e-05 0.0015 20.1 4.1 1 23 260 282 260 282 0.98
6 16 4.3e-07 4.4e-05 24.9 1.6 1 23 297 319 297 319 0.99
7 16 0.0002 0.02 16.6 2.8 1 23 325 347 325 347 0.98
8 16 0.024 2.5 10.0 1.4 1 23 354 376 354 376 0.99
9 16 2.9e-07 2.9e-05 25.5 3.1 1 23 382 404 382 404 0.99
10 16 0.022 2.3 10.1 1.5 1 23 411 433 411 433 0.99
11 16 3.1e-06 0.00031 22.2 1.5 1 23 439 461 439 461 0.99
12 16 0.0066 0.67 11.8 0.3 1 23 468 490 468 490 0.98
13 16 1e-05 0.001 20.6 1.2 1 23 496 518 496 518 0.99
14 16 0.0025 0.25 13.1 0.3 1 20 524 543 524 546 0.93
15 16 0.00025 0.025 16.2 1.6 2 23 553 574 552 574 0.97
16 16 4.4e-06 0.00045 21.8 1.4 1 23 580 603 580 603 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATCAAATCCGAGCCCATGGGCTTCTACTCCTCCCACCCGCACCTGCACGGGGCCGGGGCGCCCCCCTCTGTGGTGCGAGGTGACGTGCCCACCTCACAGGCACACTCCCAGCAGTCCCAGGGCTCGCAGCACCAACATCAACATCAGCACCACCAGATACATCAGCAGGACTTACAAGATCAACTGCAGGAGCAACAACAGCAAGAGGACAGTAAAGAGAGTCTGATATTACAGCAGCACGCCGCAGCCCTTGCACAGCAAGTACAGCACGCACAAGACCAAGAGCAAGGACAAGGTGTGGGGGCGGTGCAGGGTGGTGCGGGTGCCAAGGTGGAAGCGGGACTGCTGCCCGGGGTAGGCAGGTCCAAGCCCCAGGCCTGCAAACTCTGCGGGAAGATGCTTTCCTCGCCCTCCTCTTACTATGTGCACATGAAGCTGCACTCGGGGATTAAACCATTCGCATGCACGGTGTGCGATGCAGCGTTCTGTCGTAAGCCTTACCTGGAAGTCCACATGAGAACGCACACTGGAGAGAGACCCTTCCAGTGCGAGATATGCCTGAAGCGCTTCACACAGAAGTCAAGTCTCAACACCCACAAGAGGGTACATACAGATGAACATGTGAGATCACTGATGCTGAAGGAGCGGCCGCACCAGTGTGACGTGTGCCAGATGAGGTTCACACAGAGCTCAAGCCTGGGACGACACAAGAAAATACACACCGAGGAGCACAGGCAAGCCCTGTTAGAAAAAGTGCGACCATTCCAGTGCCACATCTGTTTCATGAGGTTCACTCAGAAGTCCAGTCTCAACCGCCACGGAAAAGTTCACACTGAAGAGCACATGCGCTCGCTGGTCAACAAGGTGCGTCCGTACAAGTGTGAGGTCTGTGACAAGCGTTTCACTCAGAAGTCAAGCCTGGGCACCCACCGACGTATACACACTGGTGAACGTCCCTTCCAGTGCACCGTCTGCCTCAAGTCATTCACACAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTCCAAGGCAGGCCCTTCCAGTGCAGTGCGTGCCCGGCGGCGTTCACCTGCAAGCAGTACCTGGAGATACACACACGCACCCACACGGGGGAGCGGCCTTACCAGTGTACCATCTGCCACAAGGCATTCGCCCAGAAGTCCACCCTCAACGTGCACAAGCGCACGCATTCAGTCCAGGGGCGGCCCTTCCAGTGTACAGCCTGCCCCGCCGCCTTCACCTGCAAGCAGTACCTGGAGATTCACACGCGCACCCACACGGGGGAGCGGCCCTACCAGTGCGACGTCTGCCTCAAGAGATTTGCCCAGAAGTCCACTCTTAATATCCACAAGAGAACCCACACAGTTCAAGGCAGACCCTTCCAGTGCGTTCAGTGCCCGGCCGCTTTTACATGTAAGCCTTATCTGGAGATCCACATCCGCATCCACACCGGGGAGCGGCCCTACCAGTGCGAACTTTGCCTTAAGAGATTTGCCCAGAAGTCCACCCTCAACATACACAAGAGGATACACACAGGGGAAAGGCCTTACGCGTGTGATATCTGCCAAAAGAGATTTGCAGTCAAGAGCTACGTCACAGCACACAgATGGTCTCATGTGGCCGAGAAGCCTTTGACATGCGACAGATGCACAATGACGTTTACATCCAAAACCCAGTTTGCCCTTCACATCCGCTCCCACACTGGAGGGCAGTGCTATGAGTGCAGCGTCTGCGGCAGGACTTTTGTTAGAGATAGTTATTTGATAAGGCATCATAATCGTGTTCATAGAGAAAACCATAGCAATGTGTCTGCCAACAGTATAGCCACTATCAACAGCGTAGCAACAAATCTCAATACAAATAATGCATTTGATTCTCCCGGAGTTTGTGATTTAAGTTTTGTTCCACTGGTCAACCGATACATGTCTAGTATGGGTGCTGGAAGTATGACGTCGCAAGGCACGCAAGTGTCGTTGCAGGATACTCAACCTAAGAGCCATCCTCTGTCTCCCTCTTCCATTGGCTCCCCACCCCCGCCTCACACCCCCACCCCGGGACCTGCACCCATCCAATCCCACACGCCCACTCCTGGACCCATGCAGGCCCACACGCCCACTCCTGGCCCCATCCAAGCCCACACTCCTACCTCCAACCCCATGCAGGCTCACACTCCTACCCCTAACCCCATGCAGGCGCACTCTTCAACCCCGTTACCTATGCAAGCACACACGGCGCCCATACCCATGCAGGCTCACACCACCCCTATTGCCTTGCAGCAGCCGTAA
Protein Sequence
MFEQQIKSEPMGFYSSHPHLHGAGAPPSVVRGDVPTSQAHSQQSQGSQHQHQHQHHQIHQQDLQDQLQEQQQQEDSKESLILQQHAAALAQQVQHAQDQEQGQGVGAVQGGAGAKVEAGLLPGVGRSKPQACKLCGKMLSSPSSYYVHMKLHSGIKPFACTVCDAAFCRKPYLEVHMRTHTGERPFQCEICLKRFTQKSSLNTHKRVHTDEHVRSLMLKERPHQCDVCQMRFTQSSSLGRHKKIHTEEHRQALLEKVRPFQCHICFMRFTQKSSLNRHGKVHTEEHMRSLVNKVRPYKCEVCDKRFTQKSSLGTHRRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFQCSACPAAFTCKQYLEIHTRTHTGERPYQCTICHKAFAQKSTLNVHKRTHSVQGRPFQCTACPAAFTCKQYLEIHTRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPFQCVQCPAAFTCKPYLEIHIRIHTGERPYQCELCLKRFAQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVAEKPLTCDRCTMTFTSKTQFALHIRSHTGGQCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIATINSVATNLNTNNAFDSPGVCDLSFVPLVNRYMSSMGAGSMTSQGTQVSLQDTQPKSHPLSPSSIGSPPPPHTPTPGPAPIQSHTPTPGPMQAHTPTPGPIQAHTPTSNPMQAHTPTPNPMQAHSSTPLPMQAHTAPIPMQAHTTPIALQQP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01012592;
90% Identity
iTF_00299303;
80% Identity
-