Moct031911.1
Basic Information
- Insect
- Myrrha octodecimguttata
- Gene Symbol
- -
- Assembly
- GCA_958510865.1
- Location
- OY294063.1:2355215-2356257[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.11 2.4e+03 -0.0 0.0 26 36 121 131 112 142 0.71 2 4 0.0025 53 5.3 0.0 22 48 178 204 170 208 0.80 3 4 7.5e-06 0.16 13.3 0.0 21 52 205 236 201 236 0.89 4 4 0.00064 14 7.1 0.0 21 48 233 260 231 264 0.90
Sequence Information
- Coding Sequence
- atggaTTACAATTCCGAAGATACTTACGATGACATGCCGTTAGAACCCATGATATTAATAAATGATGGCGAAGGGGGAGACGAAAGCAAGTCAGACGATACattggaaaaacataatttaaaattaatACAATCCGTTGGCCCGGATATATCCATTATTCCAATCAAGAGAAAAGAGCctcttttcaaaataaaactttttgaGAAAAAACGGGGATTTCAAAACAAACGTTCATACTCTATTGAAGACACCTCCGTGAAAGGCAATTCCAGAGGTCCAAGGAATAATGTGCGGATCATAACCAAAGAAGAAGCAGAACTCAATGAAACATATCAAAAACGTAAATCGGCTCCCTTGAAAAAATGTCCCGTATGTAAGAAATATTTCAGAAGAATGACCACCCACTTGTTGAAACACAAATATTTAGTAGATCCATACACTGTACAGAATGAAGGTTTTTTGTGTAACTTTTGCGATAGAGCTTTCAGTACTCACAGTAATTTTGCAATCCATTTACGAAGCCACACTGGTCAAAAACCTTACGTCTGCGAAACTTGCGGCAAGGGTTTCTCTCAGTCTTGTAATCTGGTGAACCATATGAGGATACACAGTGGGGAGAAACCATTCAAATGTCCACATTGCGACAAAGCCTTTACTCAGTCGGGGAATTTAAACAACCACATAAGATTGCACACAAATGAGAAACCTTTTAAGTGCCATTTTTGTGATAAAGCCTTTGTACAATCTGGTAATTTGAACTCCCACATAAAGAACAATCATAGGGGTCAAAAGGTGCCCAGTTCGGCTGAAGTGAATCTTCACAAAACCGTTTGA
- Protein Sequence
- MDYNSEDTYDDMPLEPMILINDGEGGDESKSDDTLEKHNLKLIQSVGPDISIIPIKRKEPLFKIKLFEKKRGFQNKRSYSIEDTSVKGNSRGPRNNVRIITKEEAELNETYQKRKSAPLKKCPVCKKYFRRMTTHLLKHKYLVDPYTVQNEGFLCNFCDRAFSTHSNFAIHLRSHTGQKPYVCETCGKGFSQSCNLVNHMRIHSGEKPFKCPHCDKAFTQSGNLNNHIRLHTNEKPFKCHFCDKAFVQSGNLNSHIKNNHRGQKVPSSAEVNLHKTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01024355;
- 90% Identity
- iTF_01024355;
- 80% Identity
- iTF_01024355;