Basic Information

Gene Symbol
Trerf1
Assembly
GCA_958510865.1
Location
OY294059.1:29675347-29720363[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.8e-11 1.8e-07 32.4 0.0 2 46 990 1034 989 1034 0.96

Sequence Information

Coding Sequence
ATGCTAACACATCGTAATAAAAAGCCATACGAATGCAAGGCAGAGGGCTGTGGAAAAAGTTATTGTGATGCCAGGTCCCTGAGGAGGCATACTGAAAATCACCACAGCTCTACAACCCTTAACACTGCGAGCACCACCATGTCACCAGCTCAGGGGGCGGCTTCAGGAGATGCTGCTTCACCACATGGATCTAGCTGTATTCAGTATGCGCCTTCGCCCACGTCTACTTCGGGGGGTAAAAGTCAGCTGCAGCAATTGCTGTCATCCGAACCTAAGAGCGGCTCAGGCAACAATGACGGCCTGACCAAACAACAACTGGATCTGATTCATCAAATAATGGAACAAACCCAACGACAATCTCAATCCAGCAGTAAACCTGTTCCGAAGCCGGCCTCCAAGCTTGTTAACAAAACCCCTGCGAAGGTGCAGAGGACATGGTCATCTCCGCTACCCCAAGGATCTGCCAATAAGGTCAGTACATGTCCGagttcttcacaatccaaagtAACAACAACCACGCCTTCAACGTCAAGTCCAGCTACATCCACCAAACCTGAACCTAAGCCGGTAGAATGCAACCTGTGCCATcgaaaattcaagaatattCCAGCATTAAACGGTCATATGAGACTTCATGGGGGCTATTTCAAGAAGGATACTGACAACAAAAAGGCAGATAAGAAAGATTCCAACGCCCCACCCCTCCAAACAGCAAGCGTAAGCGTTCGAGCACTGATCGAAGAAAAAATCATCAACAAACGATCAACATCAAACGCCCAACAATCATCTCCAAGAACTTCCGAGGAATCGATCAAAAGTTCTAACGCTCCTCCACTCTTTCCATTAACCGTGCATTCCACAACCACATCAACCAATTTGGATTCGAAAAATACCTCTTTCGTTGTACCAGCTCCCCCTCAACAACCGACAGACAAGACGCGAAGACATTCCGAAGCTGATTCCTTTATTGGTAGCAGGGCCACGTCGACGACCCAACAAGAAGCAGATACCCTCGCTGATCTAATTCTGAAACGAGAAAAGGTGTCGCTGAAGAGAGCAACTTCAGATCCTGGTCAACAACAgctcattcaatttcaatcGTCGGAGTCTTTCACCTTGACTTATCAAGGTGATGATGGGGGATACCTTTCACCACCCTTACAAGATGATGTGTTCACTCAGGTCCAAGACAGTATGCTTCTTCAAGGGGTTGATACGCAACAGCTAGCTTCGATTCAGTTCCAAGCGGATTCACTTTTGCAAGATCAGAATGACCAGCAGATACATGATCTAACTTTGGATGACTACACGAACATCCAAGATGATTCACCGTCATATCAGACAAACCATTCGGTGAATCAAGATCTGCAAGCGGTCTTGGACTCCCCATTACCTGATAGTCTGGCTGATTTCAGTACGTTTCATACTAATTCTGGACTAGACAtgccttcaccaagttttcaaaatcaatcaCCGGCAGCTTTCTCCAATTCTCCACATACCTCAGTGCCAACGCCTAGTCCTTTGCAAAGTCCATCGATACGACATGATTCACCTGGTTTCGCGTATCCAACGCCACCAGCCAGCCATGAAGCGAGGAGTCCGTGTTTTGGACAGAACGCTTCTCTTCCACTCATCTCGCCTAAGCAGAACGATTTTGCCCAGCTGCCAGAGAGAGGGGTTGATGAACCACCCCAGGTATCATCGCCACTTTCTGCTGCCTTCTTCACGTCGACTATGTCAAGTTCAGCTGCTGTTGAGGAAGCTTTGGAGGAGGTACTTCCAGGAGAGAGTATAGCAGCTGACGATATTTACCCTCTTTCTGATTCACCAGAACCACATTCGCCAGTTCCTGTCGGCCTAACTCCTTCTCAGTCTCCTTTATCGAATATGCCTTCATCTTCGAAACCAACGACACTACCAAACACTTCTAGCAGTTTCAACGTATCCCagaatttcatcaatttttccatGTCTCCCCAGTACACTTTCCAGTCTCAGATGTTGCCAAATTCGGATGATCCTCTGCTTTCAAGTAACCCTAAAGACTTCGTAACTAAGAAGAGAATAGAATTGAATGGTGTTCCTTTACGACTGGTCAGCAATCATGGTTTGATTGACTTGAACGGTGGTAACTTCGCTGGTATTTTAGTGGACACGAATGGTGAGATCAAATTGATCCAAACTGGCAATACGCCGATTCAAGCGAAGAATTTTGTTATTACGAACACTTCGATTATACAGAGTTCGGAAGTGAGTAGTGAGGATAGAAACAGTCTTAGTGTGCATAAAATCTTGAAAGGTGTTCAGTGTTCAACGAAACAAATAATCTCGAGGCCTAAGCAATTTATTGAATCAAAGAAAGAAGAGAGCAACGACGTTTTTTTGAGTCCTACAACGATACCTTCGAGTCCTGCAAAAGTTTCCCGTAAAAGGCCTAGATCAGAAGCATTACAGTTACCTATTCTGCATCAATCAAAATTGCGAGCAAGCAGAAGTAAACCACAGGGTTGTACAACTTATACTCCTCAACCCATTTTGAGTCCAAACAGATGTGGCACAGGACTGTTCTGTAATATGAAACCAAAGACAGATGATGAAGTGAGCACTTGGAGCAATGAGCCGATTCCAGAAACAGATTCAACTCCACATATAAATGTTGGTAACCAATTCCAATGTCGGATACCCCCATTGATGGAAATGCCAGACAGGTATTATAGAGATAGAAAGCATGATTTCCTTCTCTGGGATCCTGGTATCGACAAGAACACAAGCAGTGAAGTGGATATGTACCTGGAATTTGCATGCTGTGCAGCAGTTCCTGGCGGGGGTAGGAATAAGGAATATGCAATGCATTTGCTCAACATGTGTGGGGGAAATATTCACGAAGCGATGTTGAAGTTAATGCAGCCATTACCGAGTTCACAATCGGATCAACCCTTGGCGTGCTATCAGTACAGCGAAAGTGACAAATGGTCGGCAGCTGAGACCGAAGTTTTCTACAAAGGCCTGCTCAAATTCGATAAAGACTTCCAAAATATAGCTCAAGAGATCGGCACAAAAACGATAAAACAATGTGTACAATTCTATTATTTCTGGAAAAGAGTGTGCTTAGATGAATACCGAAGATTCAAACAATTGAGAGAACAGAAACAGAGCACGAGGAACATCATGATGGATCTTGATTCCGAAGATAAGCTTTTTCCTGATGCCAAATTACTAGGGATTGTAGAAACTGGATCTCCCATGCCAAACCAAGAGAGTAGGAATTTCATTTGTGAATTCGCCGACTGTTCAGCTAGTTTCAATTCTCGAGCAGCCCTTAATGGTCACATAAGAATCCATGGGGGCACTACAAGAAACTCACCGACCCCATCGTTTCTGTCACATGAGAAAAGGTCGATTTCTTCGACCTCTTTATGTCATCCGGACTCCACAGAAGATTATCCTTGTAAGATTTGTGGGAAGATATTCTCAAAGATCAAAAGTCGCAGCGCTCACATGAAATCTCACAGACCACTGGATGCAGAACCCGCTAAGAAAAAAGAGAAAGAGTTGCCTTCGACAACCTGTGCAACAAACCTTGATAATATGTCCGTGCCAAACCCGTACATTACCTAG
Protein Sequence
MLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHSSTTLNTASTTMSPAQGAASGDAASPHGSSCIQYAPSPTSTSGGKSQLQQLLSSEPKSGSGNNDGLTKQQLDLIHQIMEQTQRQSQSSSKPVPKPASKLVNKTPAKVQRTWSSPLPQGSANKVSTCPSSSQSKVTTTTPSTSSPATSTKPEPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDTDNKKADKKDSNAPPLQTASVSVRALIEEKIINKRSTSNAQQSSPRTSEESIKSSNAPPLFPLTVHSTTTSTNLDSKNTSFVVPAPPQQPTDKTRRHSEADSFIGSRATSTTQQEADTLADLILKREKVSLKRATSDPGQQQLIQFQSSESFTLTYQGDDGGYLSPPLQDDVFTQVQDSMLLQGVDTQQLASIQFQADSLLQDQNDQQIHDLTLDDYTNIQDDSPSYQTNHSVNQDLQAVLDSPLPDSLADFSTFHTNSGLDMPSPSFQNQSPAAFSNSPHTSVPTPSPLQSPSIRHDSPGFAYPTPPASHEARSPCFGQNASLPLISPKQNDFAQLPERGVDEPPQVSSPLSAAFFTSTMSSSAAVEEALEEVLPGESIAADDIYPLSDSPEPHSPVPVGLTPSQSPLSNMPSSSKPTTLPNTSSSFNVSQNFINFSMSPQYTFQSQMLPNSDDPLLSSNPKDFVTKKRIELNGVPLRLVSNHGLIDLNGGNFAGILVDTNGEIKLIQTGNTPIQAKNFVITNTSIIQSSEVSSEDRNSLSVHKILKGVQCSTKQIISRPKQFIESKKEESNDVFLSPTTIPSSPAKVSRKRPRSEALQLPILHQSKLRASRSKPQGCTTYTPQPILSPNRCGTGLFCNMKPKTDDEVSTWSNEPIPETDSTPHINVGNQFQCRIPPLMEMPDRYYRDRKHDFLLWDPGIDKNTSSEVDMYLEFACCAAVPGGGRNKEYAMHLLNMCGGNIHEAMLKLMQPLPSSQSDQPLACYQYSESDKWSAAETEVFYKGLLKFDKDFQNIAQEIGTKTIKQCVQFYYFWKRVCLDEYRRFKQLREQKQSTRNIMMDLDSEDKLFPDAKLLGIVETGSPMPNQESRNFICEFADCSASFNSRAALNGHIRIHGGTTRNSPTPSFLSHEKRSISSTSLCHPDSTEDYPCKICGKIFSKIKSRSAHMKSHRPLDAEPAKKKEKELPSTTCATNLDNMSVPNPYIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2