Basic Information

Gene Symbol
Trerf1
Assembly
GCA_963966015.1
Location
OZ014427.1:20362048-20426697[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.4e-10 1.4e-07 32.1 0.0 2 46 1136 1180 1135 1180 0.96

Sequence Information

Coding Sequence
ATGCTTTCATCTAATCTCACGGGGCCTTTTCTTGCAGGTGGCGGCAGTGGTGAAGCAGTTACGGCCACCTTCGACTTATTCGACTCGTCGAGTGGTCCTGACCTGACGCTATCCCCGCAGACGTTCACAAACTCCACAGAGACCTTCATCAACGACAACTCGGATAGCTTAGGGGGAGTCCCACAGGATCAAGATGCAGTATCAACTACAACAGATGAGAAGAAAATCGGAAGTACAACACCAGATGTGGTCAAATTAGCTGTTAAAAGACAAAGGCCGAAAGCGGCATCACCTAACCGTCAGGGGCCTCAACAATGCCAAATATGTGCCAAAGTGTTCGGAAACGCCTCAGCCTTGGCGAAGCACAAACTAACCCACAGCGACGAAAGGAAATACGTTTGCACCATGTGCGGCAAGGCTTTCAAACGACAGGACCACTTAAACGGCCACATGCTCACTCATCGTAATAAAAAGCCTTACGAATGCAAGGCGGAGGGCTGTGGAAAAAGTTATTGTGACGCCAGGTCCCTGAGGAGGCATACCGAAAATCACCACAGTTCAACAACTCTGAACACGGCGAGCACCACCATGTCCCCAGCTCAGGGAGCGGCTTCAGGAGATGCGGCCTCGCCCCATGGATCTAGCTGCATTCAGTACGCACCATCGCCCACGTCAACCTCGGGGGGAAAAAGTCAATTGCAGCAATTGCTGTCCTCCGAACCTAAAAGCGGCTCAGGCAACAATGACGGGCTGACCAAACAACAACTGGATCTGATTCATCAAATAATGGAACAAACCCAGCGACAATCTCAATCCACCAGTAAACCTGTTCCAAAATCGGCGTCCAAGCTTGTTAACAAAACCCCTGCGAAAGTGCAGAGGACATGGTCTTCTCCGCTACCACAAGGATCATCCAATAAAGTTAGTTCGTGTACCAGTTCCTCGCAAGCGAAAGTTTCTACTACAACCCCATCTATGTCTAGTCCAGCTAGCTCCAGCAAGCCAGAACCTAAGCCGGTAGAATGCAACCTCTGCCATCGGAAATTCAAGAATATCCCAGCCCTGAACGGCCATATGAGACTTCATGGTGGATATTTTAAGAAGgaCACTGACAACAAAAAATCGGAAAAGAAAGACTCCAACGCCCCACCTCTACAAACAGCTAGTGTCAGCATTCGAGCACTCATCGAAGAGAAAATCATCAACAAAcgatcaactaactcacaacAATCATCTCCAAAAACGTCTGACGAATCTATGAAGTGTTCGAATGCTCCCCCACTTTTTCCATTAACCGTGCATTCCACAACTACATCAACTACTttggattcgaaaaatacatcttTTGTAGTACCAGCGCCTCCTCAACAGTCAACAGACAAAACGCGAAGACATTCCGAAGCAGACTCCTTCATTGGCAATAGAGCCACTTCAACCACCCAACAAGATGCGGATACTCTCGCGGATCTAATTCTGAAGAGAGAAAAAGTATCACTCAAGCGTGCGACATCGGATCCGGGTCAGCAACAGCTCATCCAATTTCAAACGTCAGAATCCTTCACCTTAACTTATCAGGGAGATGATGGTGGATATCTTTCACCACCTCTTCAAGACGATGTGTTCACGCAAGTTCAAGATAGTATGCTTCTTCAAGGAGTCGATACGCAGCAGCTTGCTTCAATCCAGTTCCAAGCCGATTCCCTGCTCCAAGACCAGAATGACCAGCAAATACATGACATAGCGTTGGATGATTACACAACTATCCAAAATGATTCACCGTCATATCAATCGAATCATTCCGTGAATCAAGATTTGCAAGCCGTTTTGGATTCACCGTTGCCGGATAGTCTGGCTGATTTCAGCACGTTCCATACAAATTCCGGGTTGGATATGCCTTCTCCTAGTTTTCAGAGCCAATCCCCGGCTCCTTTTACCAATTCGCCACACACTTCAGTGCCGACTCCGAGTCCTTTGCAGAGCCCGTCGATGCGACACGATTCACCTGGCTTCGCATATCCAACTCCTCCAGCGAGCCACGAGGCGCACAGTCCGTGTTTCGGGCAAAACGCTTCCCTGCCACTCGTTTCACCTAAACAAAATGATTTTGGTCAAGTTCCAGAAAGAGGGATCGATGAACCACCGCAAGTATCTTCGCCGCTATCTGCTGCATTTTTCACATCGACTATGTCCAGCTCAGCTGCTGTTGAAGAAGCCTTAGAAGAAGTTCTTCCGGGAGAAAGTATAGCAGCTGATGACATCTATCCCCTGTCAGATTCTCCAGATCCTTCGTCTCCAGTTCCTGTTGGCCTTACTCCTTCACAGTCACCTTTATCGACTATGCCTTCATCTTCAAAACCATCGACTCTACCGAATACTTCGAATAGTTTCAACGTTCCTCagaattttatcaatttttcgaTGTCTCCCCAATACACTTTTCAATCTCAGATGTTGCCAAATTCCGATGATCCTCTCCTTTCGAGCAACCCCAAAGACTTTGTGACCAAGAAAAGAATAGAATTGAATGGCGTCCCCCTCCGATTGATAAGCAATCATGGGATGATTGACTTGAACAGTAGTAATTTCGCTGGTATTTTAGTGGATACCAATGGTGAAATCAAGTTGATTCAGACCGGGAATGCGCCGATTCAAGCAAAAAATTTTGTTATCACGAACACTTCTATTATACAGAGTTCTGAAGTGAGCAGTGAAGACAGAAACAGTATGAGTGTACACAAGATCTTGAAAGGTGTTCAGTGTTCAACGAAACAAATAATTTCGAGGCCTAAGCAAATTATTGAATCAAAAAAAGAAGAGAGCAACGATGTTTTCCTAAGTCCTACAACGATACCTTCAAGTCCTGCAAAAGTTTCCCGTAAACGGCCTAGATCAGAAGCATTACAGTTACCTATATTGCATCAATCAAAGTTACGAGCGAGCAGAAGTAAACCACAAGGTTGTACAACCTACACACCTCAACCTATTCTTAGTCCAAACAGATGTGGCACAGGACTCTTTTGTAACATAAAATCAAGAACAGATGATGAAGTGAGTACTTGGAGCAACGAACCGATTCCAGAAACAGATTCGACTCCACATATAAATGTTGGTCCTCAGTTTCAAAGTCGGATACCTCCTTTCATGGATATACCCGATAGATATTACAGGGAAAGGAAACACGAATTCCTTCTCTGGGATCCTGGCATTGACAAAAATACTGAGAGTGAAGttgatatGTATCTAGAATTTGCATGTTGTGCAGCAGTTCCTGGTGGGGGAAGAAATAAGGAATATGCCATGCACTTGCTCAATATGTGTGGAGGTAACATTCACGAAGCGATGTTGAAGTTGATGCAGCCATTACAATCGGATCAACCTCTGGCATGCTATCAGTACAGCGAAAGTGACAAATGGTCTGCGGCTGAGATCGAAGTTTTCTACAAAGGCTTGCTCAAATTTGAtaaagacttccaaaatatagcTCAAGAGATCGGCACAAAAACGATGAAGCAATGTATACAATTCTATTATTTTTGGAAAAGGGTATGCTTAGATGAATATCGAAGATTCAAACAAATGAGGGAGCAGAAGCAAAACACAAGAAATTTAATGATGGATCTCGATTTCGAAGACAAACTTTTTCCTGATGCCAAACTACTGGGGattgTGGAAACTGGATCTCCTATGCCAAATCAAGAGAGTAGAAATTTCATTTGTGAATTCGCCGACTGTTCTGCCAGTTTCAATTCTCGAGCAGCTCTGAATGGCCACATAAGAATTCATGGAGGCTCTACAAGGAATTCACCAACCCCATCATTTATGTCCCATGACAAAAGATCGATATCATCGACCTCCCTATGTCATCCGGACTCAACAGAAGATTATCCTTGTAAGATTTGTGGGAAGATATTCTCGAAGATTAAAAGTCGCAGCGCTCACATGAAATCTCACAGGCCAATGGATGGAGATTcagctaagaaaaaagaaaaagagtTACCTTCAACAACTTGTGCAACAAACCTTGATAATATGTCCGTGCCAAACCAGTACATTACCTAG
Protein Sequence
MLSSNLTGPFLAGGGSGEAVTATFDLFDSSSGPDLTLSPQTFTNSTETFINDNSDSLGGVPQDQDAVSTTTDEKKIGSTTPDVVKLAVKRQRPKAASPNRQGPQQCQICAKVFGNASALAKHKLTHSDERKYVCTMCGKAFKRQDHLNGHMLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHSSTTLNTASTTMSPAQGAASGDAASPHGSSCIQYAPSPTSTSGGKSQLQQLLSSEPKSGSGNNDGLTKQQLDLIHQIMEQTQRQSQSTSKPVPKSASKLVNKTPAKVQRTWSSPLPQGSSNKVSSCTSSSQAKVSTTTPSMSSPASSSKPEPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDTDNKKSEKKDSNAPPLQTASVSIRALIEEKIINKRSTNSQQSSPKTSDESMKCSNAPPLFPLTVHSTTTSTTLDSKNTSFVVPAPPQQSTDKTRRHSEADSFIGNRATSTTQQDADTLADLILKREKVSLKRATSDPGQQQLIQFQTSESFTLTYQGDDGGYLSPPLQDDVFTQVQDSMLLQGVDTQQLASIQFQADSLLQDQNDQQIHDIALDDYTTIQNDSPSYQSNHSVNQDLQAVLDSPLPDSLADFSTFHTNSGLDMPSPSFQSQSPAPFTNSPHTSVPTPSPLQSPSMRHDSPGFAYPTPPASHEAHSPCFGQNASLPLVSPKQNDFGQVPERGIDEPPQVSSPLSAAFFTSTMSSSAAVEEALEEVLPGESIAADDIYPLSDSPDPSSPVPVGLTPSQSPLSTMPSSSKPSTLPNTSNSFNVPQNFINFSMSPQYTFQSQMLPNSDDPLLSSNPKDFVTKKRIELNGVPLRLISNHGMIDLNSSNFAGILVDTNGEIKLIQTGNAPIQAKNFVITNTSIIQSSEVSSEDRNSMSVHKILKGVQCSTKQIISRPKQIIESKKEESNDVFLSPTTIPSSPAKVSRKRPRSEALQLPILHQSKLRASRSKPQGCTTYTPQPILSPNRCGTGLFCNIKSRTDDEVSTWSNEPIPETDSTPHINVGPQFQSRIPPFMDIPDRYYRERKHEFLLWDPGIDKNTESEVDMYLEFACCAAVPGGGRNKEYAMHLLNMCGGNIHEAMLKLMQPLQSDQPLACYQYSESDKWSAAEIEVFYKGLLKFDKDFQNIAQEIGTKTMKQCIQFYYFWKRVCLDEYRRFKQMREQKQNTRNLMMDLDFEDKLFPDAKLLGIVETGSPMPNQESRNFICEFADCSASFNSRAALNGHIRIHGGSTRNSPTPSFMSHDKRSISSTSLCHPDSTEDYPCKICGKIFSKIKSRSAHMKSHRPMDGDSAKKKEKELPSTTCATNLDNMSVPNQYIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01023836;
90% Identity
iTF_01023836;
80% Identity
iTF_00130798;