Mvar011407.3
Basic Information
- Insect
- Mylabris variabilis
- Gene Symbol
- -
- Assembly
- GCA_037464815.1
- Location
- JAZBGW010009921.1:227-1867[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.6e-05 0.09 12.9 0.1 21 52 219 250 216 252 0.88 2 4 9.6e-05 0.33 11.0 0.0 21 43 275 297 272 302 0.92 3 4 0.42 1.5e+03 -0.6 0.1 23 43 333 353 325 363 0.74 4 4 0.00024 0.83 9.8 0.2 25 48 363 386 358 390 0.87
Sequence Information
- Coding Sequence
- ATGTTGCAAGTCTTGTGTCCACAATGTAAAAAACCTCTAAATGGTGCAGCAAATCGTCTCGTTAAAGATTCCTGTGGCCATCAGAAATGTcgtttatgtttattattagaCGAAGAAAAATGCTTACAATGTTctaatgatgataaaaataatgataatttattacaaactaGTGTAATCAAATTTGAATTCAATCATACTGGTGTTATTACATCTAATGGAATTGTACAGAAAGAAGAAGCTCCTTTGGATATTGTTGAACACGATCCTTTGGATAGTATTAAACATGATCCTTTAGATGATATTGTTGAAGAAGATCCTTTAGCAATTACCGAACAAgattatatcgaaaatattaaaaaagaacCGATAGAATTGGAAGGAATTAAAGAGAAAACTAAACGGAAACGCGCAAGAAatgataaacaaaataaacgcaaatatcaacatttgaaGATACCAAATCATATAAGTGTAACTCCAGATACACAACGATATAAATGTAATGTTTGTAATAAAGAATTTGCAACTAGAGCACATATTAAATATCATGCTTATTGTACTGGAGagAAAACCGAACCATTTCAATGTAGCGTTTGTAGTAgacgatttaaaataaaagcacAATTAAACGTTCATTTGATGATACATACATCAACAACACCATACAAATGTAATTTATGTCAAAAGGGTTTCAGGGAGAAACGATCATTAAAACGACACCTTGAAACTCACACATCATTCAAACCATATATTTGTACTGATTGTGGTAAAGCATTATGTAGTAAATATTCGTTAGAGATCCATAATTTAATTCATCGTGGTGAGAAACCGTATAAATGTACAATTTGTAATGCTGGCTTTAGTAATTCATCGAATTTAAATCGACATAAAATCACACATACaaaTGACAAAATCCATATGTGTGATGAATGTGGTAAacgatttaaaagaaaattatcgtTAGTTGTACATAGACGTTCACATTTACGTATACGACCATTTAATTGTGATACATGCAAAAAATCGTTTGTTAATAACAAGGATTTGCAACGGCATCAATTAACACATTTAGAGACAAAAGCATTTACATGTAGTATATGCAATACGAAATTTCGACGTAAAGATAATTTATATCGACACGTTAAAAATGCACATCCtggtaaaaaaattgaaccaaTAACAAGTACTGTAAAACAATTGATTACAAAACggataaatgataaaaaaaatgataatagcagtaataataataataataatagtagtagtagtgataAACCGATTGATAACCCGAATGCTATTAATGTAATAACTGCCTCACctgtttgtaaaataaaaacagaaccAACAagtattataaaaacaaagaatCGTTCAAGTACAGTGATTAATGGACCATTAAAATTGGCGTTTAAAACTAGTGCATTCAAGAGtaattacaatattaacaGGTAA
- Protein Sequence
- MLQVLCPQCKKPLNGAANRLVKDSCGHQKCRLCLLLDEEKCLQCSNDDKNNDNLLQTSVIKFEFNHTGVITSNGIVQKEEAPLDIVEHDPLDSIKHDPLDDIVEEDPLAITEQDYIENIKKEPIELEGIKEKTKRKRARNDKQNKRKYQHLKIPNHISVTPDTQRYKCNVCNKEFATRAHIKYHAYCTGEKTEPFQCSVCSRRFKIKAQLNVHLMIHTSTTPYKCNLCQKGFREKRSLKRHLETHTSFKPYICTDCGKALCSKYSLEIHNLIHRGEKPYKCTICNAGFSNSSNLNRHKITHTNDKIHMCDECGKRFKRKLSLVVHRRSHLRIRPFNCDTCKKSFVNNKDLQRHQLTHLETKAFTCSICNTKFRRKDNLYRHVKNAHPGKKIEPITSTVKQLITKRINDKKNDNSSNNNNNNSSSSDKPIDNPNAINVITASPVCKIKTEPTSIIKTKNRSSTVINGPLKLAFKTSAFKSNYNINR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01022438;
- 90% Identity
- iTF_01022438;
- 80% Identity
- iTF_01022438;