Basic Information

Insect: Mylabris variabilis
Gene Symbol: RREB1
Assembly: GCA_037464815.1
Location: JAZBGW010000077.1:29057-39360[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00035 0.021 15.2 1.5 1 23 131 153 131 153 0.99

2 15 0.0014 0.082 13.4 0.4 1 23 170 192 170 192 0.98

3 15 6.8e-05 0.0041 17.5 6.4 1 23 198 220 198 220 0.98

4 15 0.32 19 5.9 2.0 2 23 337 359 336 359 0.96

5 15 0.75 45 4.7 0.9 1 20 405 424 405 426 0.91

6 15 0.082 4.9 7.8 0.1 1 23 582 604 582 604 0.96

7 15 9.2e-06 0.00055 20.2 0.8 1 23 613 635 613 635 0.99

8 15 0.0016 0.096 13.1 2.3 1 23 641 664 641 664 0.97

9 15 0.00056 0.034 14.6 3.0 1 23 1063 1086 1063 1086 0.97

10 15 0.00063 0.038 14.4 0.5 2 23 1300 1321 1299 1321 0.97

11 15 0.14 8.5 7.0 6.3 1 23 1327 1350 1327 1350 0.97

12 15 0.014 0.85 10.2 1.2 1 20 1402 1422 1402 1423 0.95

13 15 0.0083 0.5 10.9 1.1 1 23 1495 1518 1495 1518 0.96

14 15 0.019 1.1 9.8 0.4 3 23 1584 1604 1582 1604 0.93

15 15 0.0085 0.51 10.9 5.9 1 23 1610 1632 1610 1632 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00035	0.021	15.2	1.5	1	23	131	153	131	153	0.99
2	15	0.0014	0.082	13.4	0.4	1	23	170	192	170	192	0.98
3	15	6.8e-05	0.0041	17.5	6.4	1	23	198	220	198	220	0.98
4	15	0.32	19	5.9	2.0	2	23	337	359	336	359	0.96
5	15	0.75	45	4.7	0.9	1	20	405	424	405	426	0.91
6	15	0.082	4.9	7.8	0.1	1	23	582	604	582	604	0.96
7	15	9.2e-06	0.00055	20.2	0.8	1	23	613	635	613	635	0.99
8	15	0.0016	0.096	13.1	2.3	1	23	641	664	641	664	0.97
9	15	0.00056	0.034	14.6	3.0	1	23	1063	1086	1063	1086	0.97
10	15	0.00063	0.038	14.4	0.5	2	23	1300	1321	1299	1321	0.97
11	15	0.14	8.5	7.0	6.3	1	23	1327	1350	1327	1350	0.97
12	15	0.014	0.85	10.2	1.2	1	20	1402	1422	1402	1423	0.95
13	15	0.0083	0.5	10.9	1.1	1	23	1495	1518	1495	1518	0.96
14	15	0.019	1.1	9.8	0.4	3	23	1584	1604	1582	1604	0.93
15	15	0.0085	0.51	10.9	5.9	1	23	1610	1632	1610	1632	0.98

Sequence Information

Coding Sequence: ATGCAAGGCGTTGTCTTCATGCCCCAAAATCCGCAACAAGGCTCGCCGCCACCAAACAACACACTAGtTACCGATATTACAACAATGGAAACATCATCTGAACCAAATGATTTAACCAAAgagaataaacaattaaacaaccaaagtaataataataatattaataataataatcagaaCGACTCAGGTATTTATTCGATAACAAATTCAACGATTAATAGTGAATCACCGATGGATACGTCAATGAATACAACGCTACATTCCgataattgtgataattatgataatgGTAGTGAATGCAGTAGGACGCCATCACcgccatcaacaacaacaacaataacaacacaagatGAAGaagttcaacaacaacaacaacaacgacaaaaaCATTACAAATGTCCGATTTGTGATAAATCATTGTTATCGCAACATGAATTCACCTTGCATATACGTTCACATAATAACGAAACAATAACAGAAttgaataatattgataatgataaaggCTTTACATGTCGTAtatgttataaaatattaagtTCAAGTTCTAGTTTAGATCGACATGTTTTAGTACATAGTGGTGAACGGCCatttcattgtaaatattgcgGTGATACATTCACAACAAATGGTAATATGCATCGACATATGCGTACacattcaaacaataataataataatattaataataataataataataagtttgATAATTATGAATCTGATGGTAGTGTTGATAGTAGTATTAgtacaaattcaaaaaataccgaatttaataacaacattaataataaatttgtgaGAATTGAATCGAGAAAGCGCAAATTCGaggatgataataatgttgaggatgatgatgatgatattgatgatgattatgatgaaaatcatcaacaattagataatgaacaacaacattataaaTGTCCAGTATGTGAACGAAatgattttaattcaataacaatattagAGACACATTTAGAAGATAATCATCCTGATTATCCAGTTAAATGTAATCAATGCaatcaaatattacaaaatcatAAAATGTTAACAATACATCGTACAACTGTacatgataataatcaaacaaaacatCATGTATATGGTTTTAAAGATTTaacatttgttgatttttctagTGAGAAATTTCCACATATTGCACGTTATGAATGCGAAAAGAATTTACATAAAGTTAATAGTGGTTTACGTTTTCAATGCCGTAAATGTTCAAGAGCATTCCCATGTTCAAATTCATTAGAAATACATGAAaatgattgtattttaaatgataataataatggtttagatttaacgaaaacaacatcaacattaacaaaaacaacagcACAATTATCAGAGAATGATATAAAGAggaatgaatttttttcaagattgAATCTACAAGATAACTCACCGGAGAAATGCAATACGTTACCACCTgtacaacaacagcaacaacaacaattaaatgaaGCTTCAACGAAATTACGCCAACAATTATTAGCGAAAGCTATGAATCtagaaacaacaaaagatCTAGCCGATATACAATCGATAATCTCGATGACAACGAATGGTagtttattacaacaattacaaacgaaaaatgatgtaattttaaatcataaacAAACCGAACATAACGATTTCAATAATCGTCCAACAACAAACGATCAACAAGAAGAGGAGACACAAGATGTATTTGCTGTTGAATTTCGTAAGATGAAATTACGCGGTGAATTCCCTTGTCGTTTATGTACAGCAGTCTTTCCAAATTTACGTGCATTAAAAGGCCATAATCGTGCCCATttaaatagcaataataatggTATGTATCGGTGTAATATGTGCCCACATTCATCAATTGATAAAGCAGCATTAATACGTCATATGCGTACACATAATGGTGATCGTCCATATGAATGTGCATTATGTAATTATGCATTTACAACGAAAGCGAATTGTGAACGACATTTACGTAATCGACATGCGAAATCAACACGTGAAGAAgttaaaaaatcgataatctATCATCCATCTGAGGATCCAACTAAtgaagatttaaataaattggcACGTGATGATCGTAAATTGAATCTAACAAGTTGTGATTCTTCCAATGATCTACCAATCGATAAACATGGAAtaaaacgtaataataatgatggattTATAccgaatttattaaaagaaacacTACAGAAGGATACAACGAAAATTTTCCATCATAACATCACCGATATTATCCGTAATGAGAATCTAAAATCATTGAAGGATCACAATATTGAGAATGGACAATTATCGCCGTATTTACAACCGTACAATTTCTCaccgaaaaattcaaatatatcaacaccaccaacaacaacaacacatctACCATTAAAGATACAAGTGAAAAGTTTGGAAGCATTAAAAGAACCGAATTATGATGAAACACACTCAGattctgataataataacgaacatgataatgatgatgatgatgatgaaccGATGGTATTAGATTTGAGTAAGAAGAGAATCGAAGATGATGAAACAATTGTACCGGAGGATTTATCAAGGAAATCAATAACACCACCATCACTACCACCAATTCAACCACCgttattattaccaccaccaacaacagcTCAATTGAATATGAATGAAATTTTCGctcaacaattattgaaaacaacaCCACCAAAAATTGATCCAGCTGCATTGTATGCAACACAATTAGCTTTAGCGAGGAATAGTTTTGCTAGTTTTGGAAATTGGCCCGGTTTTCCTATCAATCATCTATTATTTCAATCATTACAAACACCAATTCTACCACAAGATACGCAGGATATTAAAGAACGTTTACAACGCTATCAATTATGCGGTGGtggtaatttaattacagATAATTTTACTGAACGTTTAAAGAGTTTAcagaatttttccaattataaATTGACAACAATCGAAACTAATGAGAATTTGAGTCCGAAGAAGATTGATGATTTGAAACCGTTAAATATCGatacaaattataatgaaaatttgaatgttAAACTACAAAGTccggcaacaacaacaacaacaaaacaacaaccacaagAATTAGTTCAATCGCCAAATTCTGTAAAAATGGTGATAAAAAACGGTGTTTTGATGCCAAAACAGAAACAACGTCGTTATAGAACCGAACGTCCATTCACATGTGAACATTGTTCAGCCAGGTTTACATTGCGTTCAAATATGGAACGccatataaaacaacaacatccaCAATTTTGGTCGCAACGACAACGCGGTCTCGGCACACCTGGACGtaaattacaaacaacacCTGTTAAAAACTATTGTGATATAAATGTACCGAATTATGAATCACAGAAGAGTTCCGATATGGacgatacaacaacaacaacaattaagaCCGAACAAATTGATGAGAAATTAAAATTCGCTTTATTATCACAACATTTACATggtaataatgatattaaGAAAGAAGATGAAGATGATTGTGCCCTGATTATCGATGAGAATCATGAGAAAGACGATAAGAATCGAATTTTAGAAGAGAAACTCAAAGAACTGCACGTGAAACagatgaaaaatgataataataaattaataaaacaggAAGAAAATCAAGATCTAGTATCAGTATCTCGATTATTAGATAACgcatcacaacaacaattcaaAGAGTATTTTAAACGTGATGGTGAAGAACATGAAActggtaatggtggtggtaataCGGGTGGTGGTAGtgaagaagatgaagaagGCTTGATAGCCAGCGGTAGTACCAGTGAAGGCAATATTTCCGGTACTGATGAAAATCGatCCGAATCTGAAGCTCCACCGCCAGTGAAGAAGAAATCAGCCTATTCAATGGCACCGAATCGTGTTAGTTGTCCATTTTGTAGTCGAAAATTCCCATGGAGTTCATCATTACGTCGACATATTTTAACACACACGGGCCAAAAACCGTTCAAATGTAGCCATTGTCCATTATTATTTACGACAAAATCGAATTGTGATCGGCATTTATTGAGAAAGCATGGCAATTCTGCTACTACAATAATCAATGATAttcctaataataataataataataataataataataataataataataatattaataataataataataataacaataataataatgcgaATTATTTGATGAGGAATGTTCCTGAAAGACCGTTCAAATGTTCGAATTGTCCGAGTAGTACATTTTCGACATATTCAAATTTGAAGAAGCACATCAGTTGTAAGCATTCAACGAATGCTCAAGGTGACGATATTCGGGCGCAAGGCTATGAGGCTGGCAGTTCTGAAGATGAGAAGATCTCCACTGAATCttcccaacaacaacaacaacaaccacaacaacaacagaaaattgtaaatgaaTGGAACGATCATCAAATAAATCACATAAAaaacgaacaacaacaaattttaacaaattccgATTTACCCTTCAAATGCCATCTATGCGATGGTTCATTTAGTGACCGCCAAGATGCTTTAGATCATATAAAAGAGAAGCATTTCTCTGAATACGATTTATTGATGTCGAAAAATGCTTTAGATAATAATGCAACTGTAGCAACACCTACAACGATTAcagccacaacaacaacaacaacaacagatgatcataatcatcatcatcatcatcatcatgaagATGAAGAGAACGATATTCGTGGTAAATTTCCTGATTATTCTAATCGTAAAGTGATTTGTGCATTCTGTATGCGCCGTTTCTGGTCAGCTGAAGATCTACGTCGACATATGCGTACACATACTGGTGAACGGCCATTCAGTTGTGATATTTGCCGGCGACGATTCACATTAAAACACAGCATGTTACGCCACCGTAAAAAGCATAATGTTAATTTCGATCATGACAATTGTAATAATAGcgatgatgataatcatccaattaatttagaaaagtaCAGTAAAGGTTTTATTTCAACTACAATTAGTGGTGGTGGAatcggtggtggtggtggtggtggtggcggtggtggtggtgataatttaaaacacgGGGATAAAACTGAAGAATCTGATGGTAATGAAGGTGGTGATTTGATTAGTAATCTATTAGGTATAAGGGATCGTTCGTTTATTGATAAAGTCTTAACAGCATCACCTGATGATGTTGCTAAACTACTGGGCGTTAAAAATGGTAttaaagaataa
Protein Sequence: MQGVVFMPQNPQQGSPPPNNTLVTDITTMETSSEPNDLTKENKQLNNQSNNNNINNNNQNDSGIYSITNSTINSESPMDTSMNTTLHSDNCDNYDNGSECSRTPSPPSTTTTITTQDEEVQQQQQQRQKHYKCPICDKSLLSQHEFTLHIRSHNNETITELNNIDNDKGFTCRICYKILSSSSSLDRHVLVHSGERPFHCKYCGDTFTTNGNMHRHMRTHSNNNNNNINNNNNNKFDNYESDGSVDSSISTNSKNTEFNNNINNKFVRIESRKRKFEDDNNVEDDDDDIDDDYDENHQQLDNEQQHYKCPVCERNDFNSITILETHLEDNHPDYPVKCNQCNQILQNHKMLTIHRTTVHDNNQTKHHVYGFKDLTFVDFSSEKFPHIARYECEKNLHKVNSGLRFQCRKCSRAFPCSNSLEIHENDCILNDNNNGLDLTKTTSTLTKTTAQLSENDIKRNEFFSRLNLQDNSPEKCNTLPPVQQQQQQQLNEASTKLRQQLLAKAMNLETTKDLADIQSIISMTTNGSLLQQLQTKNDVILNHKQTEHNDFNNRPTTNDQQEEETQDVFAVEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNSNNNGMYRCNMCPHSSIDKAALIRHMRTHNGDRPYECALCNYAFTTKANCERHLRNRHAKSTREEVKKSIIYHPSEDPTNEDLNKLARDDRKLNLTSCDSSNDLPIDKHGIKRNNNDGFIPNLLKETLQKDTTKIFHHNITDIIRNENLKSLKDHNIENGQLSPYLQPYNFSPKNSNISTPPTTTTHLPLKIQVKSLEALKEPNYDETHSDSDNNNEHDNDDDDDEPMVLDLSKKRIEDDETIVPEDLSRKSITPPSLPPIQPPLLLPPPTTAQLNMNEIFAQQLLKTTPPKIDPAALYATQLALARNSFASFGNWPGFPINHLLFQSLQTPILPQDTQDIKERLQRYQLCGGGNLITDNFTERLKSLQNFSNYKLTTIETNENLSPKKIDDLKPLNIDTNYNENLNVKLQSPATTTTTKQQPQELVQSPNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQFWSQRQRGLGTPGRKLQTTPVKNYCDINVPNYESQKSSDMDDTTTTTIKTEQIDEKLKFALLSQHLHGNNDIKKEDEDDCALIIDENHEKDDKNRILEEKLKELHVKQMKNDNNKLIKQEENQDLVSVSRLLDNASQQQFKEYFKRDGEEHETGNGGGNTGGGSEEDEEGLIASGSTSEGNISGTDENRSESEAPPPVKKKSAYSMAPNRVSCPFCSRKFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNSATTIINDIPNNNNNNNNNNNNNNNINNNNNNNNNNNANYLMRNVPERPFKCSNCPSSTFSTYSNLKKHISCKHSTNAQGDDIRAQGYEAGSSEDEKISTESSQQQQQQPQQQQKIVNEWNDHQINHIKNEQQQILTNSDLPFKCHLCDGSFSDRQDALDHIKEKHFSEYDLLMSKNALDNNATVATPTTITATTTTTTTDDHNHHHHHHHEDEENDIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNVNFDHDNCNNSDDDNHPINLEKYSKGFISTTISGGGIGGGGGGGGGGGGDNLKHGDKTEESDGNEGGDLISNLLGIRDRSFIDKVLTASPDDVAKLLGVKNGIKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00814598;
90% Identity: -
80% Identity: -