Basic Information

Insect: Mylabris variabilis
Gene Symbol: salm
Assembly: GCA_037464815.1
Location: JAZBGW010003984.1:905-4000[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.5 89 3.8 1.0 1 23 546 569 546 569 0.86

2 14 5.8 3.5e+02 1.9 0.0 3 23 652 673 650 673 0.91

3 14 0.011 0.69 10.5 3.8 1 23 681 703 681 703 0.98

4 14 6.3e-05 0.0038 17.6 1.4 2 23 706 727 705 727 0.97

5 14 0.00035 0.021 15.2 1.4 1 23 733 755 733 755 0.98

6 14 1.8e-05 0.0011 19.3 3.6 2 23 762 783 761 784 0.95

7 14 4.4 2.6e+02 2.3 1.9 6 23 798 815 796 815 0.94

8 14 0.0001 0.0062 16.9 3.4 2 23 821 843 820 843 0.96

9 14 0.15 8.8 7.0 0.1 2 23 859 879 858 879 0.95

10 14 2.3e-05 0.0014 18.9 1.7 1 20 885 904 885 907 0.93

11 14 0.00011 0.0067 16.8 0.2 1 23 915 937 915 937 0.99

12 14 8.3e-05 0.005 17.2 3.6 1 23 943 965 943 965 0.98

13 14 1.2e-06 7.3e-05 23.0 5.0 1 23 971 993 971 993 0.99

14 14 0.0014 0.084 13.3 7.0 1 23 999 1021 999 1022 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.5	89	3.8	1.0	1	23	546	569	546	569	0.86
2	14	5.8	3.5e+02	1.9	0.0	3	23	652	673	650	673	0.91
3	14	0.011	0.69	10.5	3.8	1	23	681	703	681	703	0.98
4	14	6.3e-05	0.0038	17.6	1.4	2	23	706	727	705	727	0.97
5	14	0.00035	0.021	15.2	1.4	1	23	733	755	733	755	0.98
6	14	1.8e-05	0.0011	19.3	3.6	2	23	762	783	761	784	0.95
7	14	4.4	2.6e+02	2.3	1.9	6	23	798	815	796	815	0.94
8	14	0.0001	0.0062	16.9	3.4	2	23	821	843	820	843	0.96
9	14	0.15	8.8	7.0	0.1	2	23	859	879	858	879	0.95
10	14	2.3e-05	0.0014	18.9	1.7	1	20	885	904	885	907	0.93
11	14	0.00011	0.0067	16.8	0.2	1	23	915	937	915	937	0.99
12	14	8.3e-05	0.005	17.2	3.6	1	23	943	965	943	965	0.98
13	14	1.2e-06	7.3e-05	23.0	5.0	1	23	971	993	971	993	0.99
14	14	0.0014	0.084	13.3	7.0	1	23	999	1021	999	1022	0.96

Sequence Information

Coding Sequence: ATGGATTCAAGTAATATTATTTGTCCAGTATGTACGCTGTATCTAAGAGCTGGTATAACATTGAAAAATCATTTAGCTAGTCATCCGAAACATAAAGTAATTGAGGCGTTGGTCCGACTAGCCGATCCTGAAGGAATACAAAAGAATGCACTATCTTCACCACCATCCTCATCATCAacagtaataacaacaacaccaaccaCACCTgtaacacaacaacaacaacaactaccaCCACACCATCAACAAAATACAACTTGTTCACCAGGTGGTAATGCAAATTCACAAATCAATATTGTTAATCAGACATGGAATCAAGGTAATTTAATGAATATGACGCCAAATGTACAACAAATGCAGGGTAATCACTTgtttatttatcaacaaaGTATGAGCAGTACAACCGGCCCACAACAGAATGTGCTCAATGTTAATCAATTATCACCACAATATGTGATACCGACTGTATTAAATCCACAAATGATGCCCTAcgtttatcaacaacaacaagtaatAATGTCGAGTGGTTCATGTTTAGCACCACCTCTAAGATCGTTACCGTATGAGATACAAACAGTAGCAGCCTCACCATCACCAACAACTGAACAGATATCCGATAcaaatattatagaaattaataataaagatccATCAAAAGATCAGCACAGTTCAAATGAAGATTTAACTGTTGATTGTAATGGTGATAAACACCAGCAaactataacaataaaagatgATACTGATTTACAAAAAGTAAATACATTTATCGATTTGAAATTctacgatgatgatgataataataataataatgatgatggtggtgagAATCATGAACATGAACAAAATTATGAAACAACAAATCCATCACCACATTCACCGACTGGTTCTGATTGGAGTATACGTGTTCGATCTGATTTGAGTAAAGCATGCcaaacacaaaataataatttatcgcCAAGATCTGTTAtacaaaatgataatattgatattgttgagattaatacaacaaaaccTGATGAACCGGAATTTTATTTCGTTGATGCTTCCaatcaccaacaacaacaacaacaagaaaatgatgaaaacgatgatgataatgataataatagtaatacgGTGATAATATCACAACAAGATTACAAACAATCAAATCCAATTTATACAGCATCGAATATTCTACAATCAAATGATCATATAGATTTTGTCGATATGGATGGTGTGCAGATGGTAATGAATGATTTCtcaacaaatcaaataatcTCACAAGTTGAGAATTTCGAAGGTAGCAGACCGGATCGTCCTGGTGTTTTAATGACAATCGGTGGTATGGTTGATGATAATCATGATGAATCATTATCGAGAGAAAGTTCGAATGTTAATATACGTGCCGATGAACGTATGCCACCTAGAGGTGAATTATCCGGACAGGAGAGTATTGATGGTACAACAAATGATACAACATGGAATCGTATACAATATGATAATGGTAATCCATCGTATGATAATATGTTTGCAAGAGATAATTGGGTTGGTTCGgataattcaaatattgatgTACCACCACCGTATGAGGACCAAGagaatgatgataatgatatgcCGACAATTGTTAGTTTTAGTGGACCACCgttgaattttaaatgttcCACATGCGGTGACGCTTTTCAATCGACAAAAGAACGTAAACAACACGAAATTGAAAAGCATGGTGATAAAACGAAATTGAATCATATCGGTACAGAGATTGGTAAGAAGAAAGTtaagaaattaattgttagatTGAAAGAGACTAAAAGTgagaatgataataatttcgataatgtttttacaaataaattaaaattagaaaatcctATTATCGGTAATGAGAATGGTGATATTCAAACGAATAATCAAAATGATAATCTACCAACAAAAATAGATGATGCTGTTACAGTTGATGTTAAAACGATTTGTTCATTGTGTGAAGCTGTTTTACCAAATGTAAGAGCGTTACGTGATCATAAATTGCAAATTCACAATATTTCATCACAGACACGTCATAAATGTACAACATGCAATCAAGTATTCCAAAATGATTACAAATTCTCCGAACATCTACGCATACATCCACTTGAATGTAAATTATGCGGTAAATTATTCTATCGCCGACAAAATATCCAATTGCATATGCGTCGCCATTTAGGTATTAAACCGTATAAATGTGATGTTTGTGAGAAAtcgtttttaacaaaacaaaaattacaagaacaTCGAAATATCCACACTGGTGAAACGCcaattaaatgtaatttatgTAATGAAACATTTCGACGATATTCAAATTTAGTCCAGCATCGTAACCGTCATCATTTGAATGTTAAAAAGAAAGTCAAAGATTATATTTGTTTCTGTAAAGAAATTTTCCATTCGAAAACGAAACTGGCCTGGCATAAAGAGATACACGATCCAAAACCGAAATCGTGTACACAATGTAGTGAGAAATTCATACATATGTCGAGTTTAACGAGACATATGCGCCGTGCCCATAACAGTCATTTCCTACCAAACGGCCATAAAAGTTCCGAAAATGTTGAATGTCCAATATGTAAAGGTATCTATTTGAAATCATCATTAGAGGTTCATATAAAAAATCACAGTGGTCAACGGCCATACAAatgtttaatttgtaataaaagcTTTACAACCCGAtggaatttaaaattacataaatgGACGCATGCTTCACGTGTTTCCAAACCGTTTAAATGCGACCAATGTAAAGGTGCATTTATACGCGAATCGGATTATATTGCACATATGAATTCACATAAAAGTATACGTCCGTATACATGTAATTATTGTGGTGCTAAATTTATTAGGAAATCGAATTGTCAACGGCATGTTAGAGAACATGAAAATGATAAAACGTTCAGATGTAAAGTATGCGATAAAACTTTCCATCGGTCTTACTATCTGAAAGATCATATGCGGATCCATACGGGTGTACGACCGTATTCGTGTCATATTTGTGGTAAAACATCAACGACTAAATCAAATCATAATAAACATGTACAGATACATCATGCTAGAGAACCGGTGAGCacagaaaattga
Protein Sequence: MDSSNIICPVCTLYLRAGITLKNHLASHPKHKVIEALVRLADPEGIQKNALSSPPSSSSTVITTTPTTPVTQQQQQLPPHHQQNTTCSPGGNANSQINIVNQTWNQGNLMNMTPNVQQMQGNHLFIYQQSMSSTTGPQQNVLNVNQLSPQYVIPTVLNPQMMPYVYQQQQVIMSSGSCLAPPLRSLPYEIQTVAASPSPTTEQISDTNIIEINNKDPSKDQHSSNEDLTVDCNGDKHQQTITIKDDTDLQKVNTFIDLKFYDDDDNNNNNDDGGENHEHEQNYETTNPSPHSPTGSDWSIRVRSDLSKACQTQNNNLSPRSVIQNDNIDIVEINTTKPDEPEFYFVDASNHQQQQQQENDENDDDNDNNSNTVIISQQDYKQSNPIYTASNILQSNDHIDFVDMDGVQMVMNDFSTNQIISQVENFEGSRPDRPGVLMTIGGMVDDNHDESLSRESSNVNIRADERMPPRGELSGQESIDGTTNDTTWNRIQYDNGNPSYDNMFARDNWVGSDNSNIDVPPPYEDQENDDNDMPTIVSFSGPPLNFKCSTCGDAFQSTKERKQHEIEKHGDKTKLNHIGTEIGKKKVKKLIVRLKETKSENDNNFDNVFTNKLKLENPIIGNENGDIQTNNQNDNLPTKIDDAVTVDVKTICSLCEAVLPNVRALRDHKLQIHNISSQTRHKCTTCNQVFQNDYKFSEHLRIHPLECKLCGKLFYRRQNIQLHMRRHLGIKPYKCDVCEKSFLTKQKLQEHRNIHTGETPIKCNLCNETFRRYSNLVQHRNRHHLNVKKKVKDYICFCKEIFHSKTKLAWHKEIHDPKPKSCTQCSEKFIHMSSLTRHMRRAHNSHFLPNGHKSSENVECPICKGIYLKSSLEVHIKNHSGQRPYKCLICNKSFTTRWNLKLHKWTHASRVSKPFKCDQCKGAFIRESDYIAHMNSHKSIRPYTCNYCGAKFIRKSNCQRHVREHENDKTFRCKVCDKTFHRSYYLKDHMRIHTGVRPYSCHICGKTSTTKSNHNKHVQIHHAREPVSTEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00987337; iTF_00987336; iTF_00814582; iTF_00929810; iTF_00813910;
90% Identity: -
80% Identity: -