Basic Information

Insect: Mylabris variabilis
Gene Symbol: -
Assembly: GCA_037464815.1
Location: JAZBGW010001905.1:5863-8160[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0017 0.099 13.1 1.3 1 23 102 124 102 124 0.99

2 14 0.31 18 6.0 1.2 2 19 130 147 129 150 0.92

3 14 9.7e-06 0.00058 20.1 3.0 1 23 162 184 162 184 0.97

4 14 0.00019 0.011 16.1 0.3 3 23 189 210 188 210 0.94

5 14 0.00074 0.045 14.2 5.5 1 23 219 241 219 241 0.98

6 14 0.00062 0.037 14.4 3.1 1 23 274 296 274 296 0.97

7 14 5e-05 0.003 17.9 0.7 1 23 299 322 299 322 0.95

8 14 0.0016 0.093 13.2 0.2 1 23 331 353 331 353 0.98

9 14 0.036 2.2 8.9 4.0 3 19 362 378 360 384 0.91

10 14 0.00012 0.0074 16.6 3.8 2 23 395 417 394 417 0.95

11 14 0.015 0.9 10.1 2.8 1 23 425 447 425 447 0.95

12 14 8.2e-05 0.0049 17.2 1.8 1 23 454 477 454 477 0.95

13 14 1.6e-06 9.6e-05 22.6 5.4 1 23 483 505 483 505 0.98

14 14 1.3e-05 0.00076 19.8 2.8 1 23 511 534 511 534 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0017	0.099	13.1	1.3	1	23	102	124	102	124	0.99
2	14	0.31	18	6.0	1.2	2	19	130	147	129	150	0.92
3	14	9.7e-06	0.00058	20.1	3.0	1	23	162	184	162	184	0.97
4	14	0.00019	0.011	16.1	0.3	3	23	189	210	188	210	0.94
5	14	0.00074	0.045	14.2	5.5	1	23	219	241	219	241	0.98
6	14	0.00062	0.037	14.4	3.1	1	23	274	296	274	296	0.97
7	14	5e-05	0.003	17.9	0.7	1	23	299	322	299	322	0.95
8	14	0.0016	0.093	13.2	0.2	1	23	331	353	331	353	0.98
9	14	0.036	2.2	8.9	4.0	3	19	362	378	360	384	0.91
10	14	0.00012	0.0074	16.6	3.8	2	23	395	417	394	417	0.95
11	14	0.015	0.9	10.1	2.8	1	23	425	447	425	447	0.95
12	14	8.2e-05	0.0049	17.2	1.8	1	23	454	477	454	477	0.95
13	14	1.6e-06	9.6e-05	22.6	5.4	1	23	483	505	483	505	0.98
14	14	1.3e-05	0.00076	19.8	2.8	1	23	511	534	511	534	0.96

Sequence Information

Coding Sequence: atgcgACATTTACGAATTCCCGGTCAGAATCTGAAGAATTTATCCGCTTTTAAAAGTCAAATTACAAACATTATAAGAgagattaataaatttgatgatACTGATAAAAATGAAGCTTTCTCTTATATACAGGATTGTATCAAAAATGAGCCTAGTTGtagcaaaacaacaacaacaaatacagcAGGTCCAAGAAAACAACAACGTTCAGTCAAATGCCATTTAAAGAGACGATTACGTAGTGGTAAACTCTTgctaaatgataaaattacaaaaactaagcgtagaaaaaagaaacaattataTAAATGTAAAGTTTGTAATGTTAGTGAAAAATCGAAATCGAATATGTTGAAACATTTAGAAACACACGTTGAGGCTCCATTATCGTGTTTACGATGCAGGAAAACATTCAATGGAAACGTGTCGTTTAAATGGCATTCATTACATTATTGTAAACCGAAACAGATtcgaattaataaatttaaatgtaatcaATGTAGCAAGaaattctcaacaaaACGCACCCTAGAGAGTCATCTACAAGGCCATAAACGGAATAATTGCACGTATTGTGATAAAGTAATAACGAGACgtgtacaattaattaaacatcTATTAGAGGaacattcaataaaattggaaCGGCACACACACCGTTGTAATACATGCGAGAAAAGttATATAAAACGTCGCAGTTTATTTTATCATATGCGACAGCATGTTCCTGGTAAATTTGTATGTTTAGAATGTGGTGAAATCAATGAGACAATCGAGATTTatcaaaatcacaaaaaacaacacgattttttaaaattgttcacaTGTCAGAGATGTAACGAGAAATTTTCGAGACGTTCCCAATATTTACTACATTTAActCAACATGATCGTTATAAATGCAATACATGTAATGAAACGTTTCCATCTCgtgataatataattaaacataaacaaTTAGGGCATGATATTGAAGGTTTACATCCACGTTTTGTTTGTTCACAATGTCGGGCAACTTTCGCTAATGAAAATCGTTTAGTTGCACATCTACGTTTACATTCaggTGATTCACGTACGGTTAATTGTACATACTGTAAGAAAACATTCAGTTCTTTCTATGCATATTATAAACATTGTAGTACAATATTTCATGAGAAATGCAGTCCGGAATTGAGTGATATTGTTTGTAAGATATGCGATaaacattttacaaaaaaatacgttTTGAAGCAGCACATTCATCGTGTTCACAATAAATATTCGCATGAAGCTTATAAATGTCAATATTGCAAATATGAAACGTATAGTAAAAGTAATATTCTACGGCATTCATCGTTGCATTTTCgtcaaaataacaattttacatGTGAATATTGCGGTAAAACATGCGATAATATGGCCAGTTTAAAGGATCACATCTCCTACAACCATTTACAAGAAAAACAGTTTCATTGTGAGAAATGTAACAAATCGTTTAAACGTAACTCAGAATTGGTACGGCATAGGAAGAGTCATTCAGATGAACGTCCCTATATTTGTACGAAttgtggtaaaaattataaacgtttAACACATTTGAAACGGCATGAACAATCAGCACATCAAATCATGCAACGGACACGACGTATCCAGAATGTAATTGTGGAAACTACCAAGAATACTGTTGAAACACCGACAACAAATAATGACAAGATCTTGATATTACAATCATAtacgattaaaaatgatgatgatcataatgttaaaataatcaatttacatcataataatgataatgataatttgtttttaacaattccagataatgataataaatgtgATGATCAATTGATGAGTACGTTTACACCGGAAAAGAATTGGGGTATTGAACCGgatttgtataaatattataacGATATACCGATGAATTTCGAGAAAGATGAAACCAGTCTTAATCACAAcgataaacaatttttgtaa
Protein Sequence: MRHLRIPGQNLKNLSAFKSQITNIIREINKFDDTDKNEAFSYIQDCIKNEPSCSKTTTTNTAGPRKQQRSVKCHLKRRLRSGKLLLNDKITKTKRRKKKQLYKCKVCNVSEKSKSNMLKHLETHVEAPLSCLRCRKTFNGNVSFKWHSLHYCKPKQIRINKFKCNQCSKKFSTKRTLESHLQGHKRNNCTYCDKVITRRVQLIKHLLEEHSIKLERHTHRCNTCEKSYIKRRSLFYHMRQHVPGKFVCLECGEINETIEIYQNHKKQHDFLKLFTCQRCNEKFSRRSQYLLHLTQHDRYKCNTCNETFPSRDNIIKHKQLGHDIEGLHPRFVCSQCRATFANENRLVAHLRLHSGDSRTVNCTYCKKTFSSFYAYYKHCSTIFHEKCSPELSDIVCKICDKHFTKKYVLKQHIHRVHNKYSHEAYKCQYCKYETYSKSNILRHSSLHFRQNNNFTCEYCGKTCDNMASLKDHISYNHLQEKQFHCEKCNKSFKRNSELVRHRKSHSDERPYICTNCGKNYKRLTHLKRHEQSAHQIMQRTRRIQNVIVETTKNTVETPTTNNDKILILQSYTIKNDDDHNVKIINLHHNNDNDNLFLTIPDNDNKCDDQLMSTFTPEKNWGIEPDLYKYYNDIPMNFEKDETSLNHNDKQFL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00987333; iTF_00929803; iTF_00813882; iTF_00814574;
90% Identity: iTF_00813882;
80% Identity: -