Mvar005945.1
Basic Information
- Insect
- Mylabris variabilis
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_037464815.1
- Location
- JAZBGW010002380.1:1-4715[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-76 7.5e-73 245.4 21.9 90 300 1 235 1 235 0.89 2 2 0.078 4.5e+02 -0.2 5.2 120 174 233 284 232 303 0.79
Sequence Information
- Coding Sequence
- aaTGAATTAAAAGAAGTCGAAGAGAAATTTCGGAAAGCGATGATTGCCAATGCTCAACTCGATAATGATAAAATGGCTCAGACATATCAACTAGAATTACTAAAAGAtcgtaTAGAAGAATTAGAAGAGGAACATGCACAATTGAAACGTGAACATCGTGAAAAATGTCGAGAATATGATCAATTGAAACGTTTAtgtggaaaattaaaagatgatTTGGCTGTGACAAAAGCTGAATTAATTGAACGTGATCAATTAATTACTGAAAAAGGTTTAGTAATtgttggtggtgatgatgatacaATTATTGATGAAGAACAAAGAAATGGCGATATTAATAATCTTAATAATAGTTTAAATAATAGTACACCGAAAAGGGCATTAGTTAGTATTGAAAATGcacaattattagaaagtgCCGGTGAAGGTAGTTTAGATGTACGATTAGCGAAATTTGCAAAAGAGAAAAGTGAATTACAAGATCAAATTAgtcatttaaaattagaattagaagAAGAGAGGAATAAACGAAAGAAATATACTAGTGGTGGTAATAGTAgtggtaataatagtagtaataataatacacagAATGGACCATCTACAGATTATGATACAGATGAAATTGATATACAACgaGAAGCTAGTAGACAATTAGGTGATTATAAATTTAGAGCACAGAAAGCTGAACAAGACGTGGCAACATTGCAAGCAACTGTAGCTAGATTAGAAAGTCAAGTGATTCGATATAAAGCAGCTGCTGAAATGTCTGAAAAAGCAGAGGAGgcattaaaattagaaaaaagaaaactacaACGTGAAGCAAGAGAAGCATTAAGTCGTGCTGAAGAATTGGAGACATCAAATACACATCTATTAAAACGTTtagataaattgaaaaatgctAAATCAACATTATTGAAGGAACTTTGA
- Protein Sequence
- NELKEVEEKFRKAMIANAQLDNDKMAQTYQLELLKDRIEELEEEHAQLKREHREKCREYDQLKRLCGKLKDDLAVTKAELIERDQLITEKGLVIVGGDDDTIIDEEQRNGDINNLNNSLNNSTPKRALVSIENAQLLESAGEGSLDVRLAKFAKEKSELQDQISHLKLELEEERNKRKKYTSGGNSSGNNSSNNNTQNGPSTDYDTDEIDIQREASRQLGDYKFRAQKAEQDVATLQATVARLESQVIRYKAAAEMSEKAEEALKLEKRKLQREAREALSRAEELETSNTHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -