Mmin003575.1
Basic Information
- Insect
- Mycalesis mineus
- Gene Symbol
- -
- Assembly
- GCA_034621355.1
- Location
- CM067884.1:3361072-3371175[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.025 1.7 10.0 1.5 2 23 236 257 235 258 0.92 2 19 0.3 21 6.5 0.1 3 21 295 313 294 314 0.91 3 19 0.3 21 6.5 0.1 3 21 341 359 340 360 0.91 4 19 0.3 21 6.5 0.1 3 21 387 405 386 406 0.91 5 19 0.3 21 6.5 0.1 3 21 425 443 424 444 0.91 6 19 0.3 21 6.5 0.1 3 21 463 481 462 482 0.91 7 19 0.3 21 6.5 0.1 3 21 501 519 500 520 0.91 8 19 0.3 21 6.5 0.1 3 21 547 565 546 566 0.91 9 19 0.3 21 6.5 0.1 3 21 593 611 592 612 0.91 10 19 0.3 21 6.5 0.1 3 21 639 657 638 658 0.91 11 19 0.3 21 6.5 0.1 3 21 677 695 676 696 0.91 12 19 0.3 21 6.5 0.1 3 21 715 733 714 734 0.91 13 19 0.3 21 6.5 0.1 3 21 753 771 752 772 0.91 14 19 0.3 21 6.5 0.1 3 21 791 809 790 810 0.91 15 19 0.3 21 6.5 0.1 3 21 829 847 828 848 0.91 16 19 0.3 21 6.5 0.1 3 21 867 885 866 886 0.91 17 19 0.3 21 6.5 0.1 3 21 905 923 904 924 0.91 18 19 0.3 21 6.5 0.1 3 21 943 961 942 962 0.91 19 19 0.00091 0.063 14.5 1.2 2 23 992 1013 991 1014 0.94
Sequence Information
- Coding Sequence
- atgGATGAAGATGAGTTTAATTCAAATGACGCAGGAACTGAGGTGACCATTTTAGAATGCCGGACTTGTTTGCATGTAATGAGTCCAGACGCTATTTTATTCAACATTTTCGAAAAGTGGTCCCCACCTTGGGACGGGATGGCGGACACTATCGCTGAAGATATAGAGAAGCTTGCTAATATAAAGGTTCAGGAGTCAGATAGACATTCAAAAGTAATATGCAGGACTTGTTATGAGCTACTACACTCTGCTTGCACATTCACAACAGcagtgaaaataaataatgacatactACAACAcagATACCCTCCTGAGCCAGATATACCAGACATAGATGCAGCTTGGCCTAGACCAATACAAATAAGCAAATCTgttaatagtttaataaatgaaaactcTATGAACTTTGATATTAAACAAGAAGTTTTATCAGATGATGGATACACTGTTGAAAATGGTATATATGAGAATGGGGATAATATATCTGAGATGGACATCAAGGTTGAGCCTGAGGAAATGATTCATGATGATTTGAAGCAACCATCGGAGCAGATTATGaatgGGTCAATATCTTCTGACACATTTGAGATTGACATGACACAACATTTAACAAATGGAAGCAGTGCAGatcatttaataacaaaaataaaggaGGAACTGTTAAGTGAAGAGGAGACTGAACTGATGCAAAACGATCTACCGCTGGAATGTCTACTGTGTACTAAACACTTTAAAAGTGTCACTGGACTGAAGGCTCATGTAATAGCTCATCATTCATACAAATCTGTTAAGAGAAAGAATGACTGTTTGTCTCCTGAACGAAATAaagGTTTCCCAACGCCCACAGACCTGATGTTGCGCAGTGACGACAGTAAGAACGTGTGCTACGCGTGCAACGAGGCGTTCGACACGTTCGCTCTGCTGACCAAACACAGTCGCAAGTGTAAAGCGATCACCAGGCAACAGCACAAGAGACCGAAAACTCTGAACGATGTTATTAGTGACGACAGTAAGAACGTGTGCTACGCGTGCAACGAGGCGTTCGACACGTTCGCTCTGCTGACCAAACACAGTCGCAAGTGTAAAGCGATCACCAGGCAACAGCACAAGAGACCGAAAACTCTGAACGATGTTATTAGTGACGACAGTAAGAACGTGTGCTACGCGTGCAACGAGGCGTTCGACACGTTCGCTCTGCTGACCAAACACAGTCGCAAGTGTTTCCCAACGCCCACAGACCTGATGTTGCGCAGTGACGACAGTAAGAACGTGTGCTACGCGTGCAACGAGGCGTTCGACACGTTCGCTCTGCTGACCAAACACAGTCGCAAGTGTTTCCCAACGCCCACAGACCTGATGTTGCGCAGTGACGACAGTAAGAACGTGTGCTACGCGTGCAACGAGGCGTTCGACACGTTCGCTCTGCTGACCAAACACAGTCGCAAGTGTTTCCCAACGCCCACAGACCTGATGTTGCGCAGTGACGACAGTAAGAACGTGTGCTACGCGTGCAACGAGGCGTTCGACACGTTCGCTCTGCTGACCAAACACAGTCGCAAGTGTAAAGCGATCACCAGGCAACAGCACAAGAGACCGAAAACTCTGAACGATGTTATTAGTGACGACAGTAAGAACGTGTGCTACGCGTGCAACGAGGCGTTCGACACGTTCGCTCTGCTGACCAAACACAGTCGCAAGTGTAAAGCGATCACCAGGCAACAGCACAAGAGACCGAAAACTCTGAACGATGTTATTAGTGACGACAGTAAGAACGTGTGCTACGCGTGCAACGAGGCGTTCGACACGTTCGCTCTGCTGACCAAACACAGTCGCAAGTGTAAAGCGATCACCAGGCAACAGCACAAGAGACCGAAAACTCTGAACGATGTTATTAGTGACGACAGTAAGAACGTGTGCTACGCGTGCAACGAGGCGTTCGACACGTTCGCTCTGCTGACCAAACACAGTCGCAAGTGTTTCCCAACGCCCACAGACCTGATGTTGCGCAGTGACGACAGTAAGAACGTGTGCTACGCGTGCAACGAGGCGTTCGACACGTTCGCTCTGCTGACCAAACACAGTCGCAAGTGTTTCCCAACGCCCACAGACCTGATGTTGCGCAGTGACGACAGTAAGAACGTGTGCTACGCGTGCAACGAGGCGTTCGACACGTTCGCTCTGCTGACCAAACACAGTCGCAAGTGTTTCCCAACGCCCACAGACCTGATGTTGCGCAGTGACGACAGTAAGAACGTGTGCTACGCGTGCAACGAGGCGTTCGACACGTTCGCTCTGCTGACCAAACACAGTCGCAAGTGTTTCCCAACGCCCACAGACCTGATGTTGCGCAGTGACGACAGTAAGAACGTGTGCTACGCGTGCAACGAGGCGTTCGACACGTTCGCTCTGCTGACCAAACACAGTCGCAAGTGTTTCCCAACGCCCACAGACCTGATGTTGCGCAGTGACGACAGTAAGAACGTGTGCTACGCGTGCAACGAGGCGTTCGACACGTTCGCTCTGCTGACCAAACACAGTCGCAAGTGTTTCCCAACGCCCACAGACCTGATGTTGCGCAGTGACGACAGTAAGAACGTGTGCTACGCGTGCAACGAGGCGTTCGACACGTTCGCTCTGCTGACCAAACACAGTCGCAAGTGTTTCCCAACGCCCACAGACCTGATGTTGCGCAGTGACGACAGTAAGAACGTGTGCTACGCGTGCAACGAGGCGTTCGACACGTTCGCTCTGCTGACCAAACACAGTCGCAAGTGTTTCCCAACGCCCACAGACCTGATGTTGCGCAGTGACGACAGTAAGAACGTGTGCTACGCGTGCAACGAGGCGTTCGACACGTTCGCTCTGCTGACCAAACACAGTCGCAAGTGTAAGGCGATCACCAGGCAACAGCACAAGAGACCGAAAACTCTGAACGATGTTATTAGACCGCCACCACAAGACGAGCCGAAATTAAAATGCACCCAATGCGATGAAACTTTCACAGACATGTACTACGTGACCATACATCAAGAGATACACCATCCGACATCGACCGCTGAGAAAACAGACTTGCAACAGGACAAGGAAATGGAAACTGAAACACTGGAGAATATATTCAGTGAAAGTGGTGACTTATAg
- Protein Sequence
- MDEDEFNSNDAGTEVTILECRTCLHVMSPDAILFNIFEKWSPPWDGMADTIAEDIEKLANIKVQESDRHSKVICRTCYELLHSACTFTTAVKINNDILQHRYPPEPDIPDIDAAWPRPIQISKSVNSLINENSMNFDIKQEVLSDDGYTVENGIYENGDNISEMDIKVEPEEMIHDDLKQPSEQIMNGSISSDTFEIDMTQHLTNGSSADHLITKIKEELLSEEETELMQNDLPLECLLCTKHFKSVTGLKAHVIAHHSYKSVKRKNDCLSPERNKGFPTPTDLMLRSDDSKNVCYACNEAFDTFALLTKHSRKCKAITRQQHKRPKTLNDVISDDSKNVCYACNEAFDTFALLTKHSRKCKAITRQQHKRPKTLNDVISDDSKNVCYACNEAFDTFALLTKHSRKCFPTPTDLMLRSDDSKNVCYACNEAFDTFALLTKHSRKCFPTPTDLMLRSDDSKNVCYACNEAFDTFALLTKHSRKCFPTPTDLMLRSDDSKNVCYACNEAFDTFALLTKHSRKCKAITRQQHKRPKTLNDVISDDSKNVCYACNEAFDTFALLTKHSRKCKAITRQQHKRPKTLNDVISDDSKNVCYACNEAFDTFALLTKHSRKCKAITRQQHKRPKTLNDVISDDSKNVCYACNEAFDTFALLTKHSRKCFPTPTDLMLRSDDSKNVCYACNEAFDTFALLTKHSRKCFPTPTDLMLRSDDSKNVCYACNEAFDTFALLTKHSRKCFPTPTDLMLRSDDSKNVCYACNEAFDTFALLTKHSRKCFPTPTDLMLRSDDSKNVCYACNEAFDTFALLTKHSRKCFPTPTDLMLRSDDSKNVCYACNEAFDTFALLTKHSRKCFPTPTDLMLRSDDSKNVCYACNEAFDTFALLTKHSRKCFPTPTDLMLRSDDSKNVCYACNEAFDTFALLTKHSRKCFPTPTDLMLRSDDSKNVCYACNEAFDTFALLTKHSRKCKAITRQQHKRPKTLNDVIRPPPQDEPKLKCTQCDETFTDMYYVTIHQEIHHPTSTAEKTDLQQDKEMETETLENIFSESGDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01021896;
- 90% Identity
- iTF_01021896;
- 80% Identity
- iTF_01021896;