Mmin015545.1
Basic Information
- Insect
- Mycalesis mineus
- Gene Symbol
- -
- Assembly
- GCA_034621355.1
- Location
- CM067896.1:13281357-13285781[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00076 0.053 14.7 3.9 1 23 135 157 135 157 0.97 2 14 3.9e-05 0.0027 18.8 2.6 1 23 162 185 162 185 0.97 3 14 0.00047 0.033 15.4 0.5 1 23 219 241 219 241 0.97 4 14 0.02 1.4 10.3 0.7 1 23 253 276 253 276 0.90 5 14 0.00014 0.0095 17.0 2.3 1 23 294 316 294 316 0.98 6 14 1.7e-05 0.0012 19.9 2.3 1 23 328 350 328 350 0.98 7 14 0.00014 0.0099 17.0 1.8 1 23 356 378 356 378 0.98 8 14 6.1e-05 0.0042 18.2 5.5 1 23 384 406 384 406 0.99 9 14 2.5e-07 1.7e-05 25.7 1.7 1 23 412 434 412 434 0.95 10 14 1.4e-05 0.00095 20.2 3.2 1 23 440 462 440 462 0.98 11 14 6.7e-06 0.00046 21.2 0.4 1 23 468 490 468 490 0.97 12 14 3.9e-05 0.0027 18.8 2.9 1 23 496 518 496 518 0.97 13 14 2.3e-06 0.00016 22.6 1.2 1 23 524 546 524 546 0.98 14 14 0.0087 0.6 11.4 0.7 1 20 552 571 552 574 0.94
Sequence Information
- Coding Sequence
- ATGTTAGATTTCGAAAGAACTTGCCGGACGTGCATGAAGACGAATAGTGCAGTTGGTCTCATTAACTTGTTTGGACCTCTGAAAATTGAAGATAATTGCTCGTTAAAACTAGCAGATCTACTAAAAGAAACGATCACATTGGAGATAGATGAAGACGATGGTCTGCCACAAAATGTATGCAATGAATGTTTAAAAAGTCTCCAAATAATGTACACATTCCGTACTCAAGCACTCAATTCTGAAAACGAACTGAAAAAAATAGCATCAGCATGCACtactataaaaaatgaaacagaaTTGGATGTCAAATATGAAAGTGATCATGACTATATGCATTCCTACGATGACTTCATTTATGATGATACGCATAGAACGAAAGTTGAATCTGATGATCTGTCAATGTACATCTGCAATATATGTAATAAGAAGTTTACAAAACGAAAAAGGTTCTTAAAACACCTATCCAATCATGAAAACCCAAAATTTCCATGTCAGCTATGTaagaaaacatttcaaaaagAGTCCTCTTTGCAAAGACATTTAAATAAACGTCACAATGAACACTTAAGTGAGTCCGATGTAACTAACAGTCTGCTAAATAATGCAGGTAGAGATTTAGGAGTGAAAGTTGAAATAGAGAGCATTAATGAACATTATCAATGTTCTGAATGCGGTATTATGTTCAATGATCAACAGTCTATGTTGTTACACTTCAAAGAACACACACATTTTAACATAGATTTAGACAAACATGTTTACAGCTGTATGAAATGCTTAATAAGTTATCCAACTCAACAACAATTAACAAAGCATAATTTGGAAAATcacaatatagataaaaaagataatgaattattattaattggatCTGACAAAAAGCATGAATGTCCAGAATGTCATGTTGTGTTTGAAAAGCAGAGGTCCTTAGCATcccatttaaaaaaacacaaagtcAGAACTAAAGTAAAAACTGAGAGTGCGTACTACTGTGGTCATTGTGACAAAGCTTTTGGTTTAAAGACACTTCTCAGAAGACATATGAAGTTGCATTTTAATGATCGTCCATTCAGATGCACCAAATGTTCCAACAGTTATACCCGTCAAGATCAGTTGGTGGTGCACCTTAGTAAGCACAATGGCTCTAAGAAATATACCTGTTCACATTGTGAGAAagCATTCACACAGCTCTGTAGTCTGAAAGACCATGAGAGGACTCACACCGGAGAAACACCTTTCCTCTGTTCTCAATGCGGCAAGGGGTTCAGCAACAGTTCCAATTTGAGACAGCATCTGAAACGTCACTCTGGAGTAAAGCCATTCTCCTGTAACCTGTGCCCTAAGACATTTTGTACTAAAGGTCAAATGAAGTCTCACATAGACACCCATGCGGGAgtacatccctacaaatgtgatGTGTGTGGAGCGAGCTTCACTAAACCTAACTCATTGAAGAAACATTCCCTTATACATCTAGGTATTAAGCCGTTTGCCTGCGATAACTGTGCTATGagGTTCTCATCAAAAGATCACTTGAAACGACACAAACGTATACACACGGGCGAGAAACCCTACCGCTGCCAACATTGTCCGCGCGCGTTCTCGCAGAGCAACGACCTGGTGAAGCATGTACGCGCGCACCTCGGCCAGAACATCTACCAGTGCACAGTTTGCCAAGCGAAATTCCGCCTTATGAGAGAGTTGAAACGTCACTACCCAGTGCATTACATCGATGGAGTTGAAACGAATCCCATGCCCGAAATCGAAGCGCCCCTTGTAATACTCAAGGAGTGCTCCGACCAGGATATGGACAATAACGTACCGACTGACGGCCAGATTACTATAACGTTTAATAGCAACGTTCTAGATAAGAACAGTATTGGtgatataactataaatattgaACCGGGAAAGATTAGTAACTAG
- Protein Sequence
- MLDFERTCRTCMKTNSAVGLINLFGPLKIEDNCSLKLADLLKETITLEIDEDDGLPQNVCNECLKSLQIMYTFRTQALNSENELKKIASACTTIKNETELDVKYESDHDYMHSYDDFIYDDTHRTKVESDDLSMYICNICNKKFTKRKRFLKHLSNHENPKFPCQLCKKTFQKESSLQRHLNKRHNEHLSESDVTNSLLNNAGRDLGVKVEIESINEHYQCSECGIMFNDQQSMLLHFKEHTHFNIDLDKHVYSCMKCLISYPTQQQLTKHNLENHNIDKKDNELLLIGSDKKHECPECHVVFEKQRSLASHLKKHKVRTKVKTESAYYCGHCDKAFGLKTLLRRHMKLHFNDRPFRCTKCSNSYTRQDQLVVHLSKHNGSKKYTCSHCEKAFTQLCSLKDHERTHTGETPFLCSQCGKGFSNSSNLRQHLKRHSGVKPFSCNLCPKTFCTKGQMKSHIDTHAGVHPYKCDVCGASFTKPNSLKKHSLIHLGIKPFACDNCAMRFSSKDHLKRHKRIHTGEKPYRCQHCPRAFSQSNDLVKHVRAHLGQNIYQCTVCQAKFRLMRELKRHYPVHYIDGVETNPMPEIEAPLVILKECSDQDMDNNVPTDGQITITFNSNVLDKNSIGDITINIEPGKISN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00205374;
- 90% Identity
- -
- 80% Identity
- -