Bany016178.1
Basic Information
- Insect
- Bicyclus anynana
- Gene Symbol
- -
- Assembly
- GCA_947172395.1
- Location
- OX359220.1:13557096-13563682[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0006 0.032 14.8 2.9 1 23 136 158 136 158 0.97 2 14 4.6e-05 0.0025 18.4 1.5 1 23 163 186 163 186 0.96 3 14 0.0028 0.15 12.7 0.8 1 23 220 242 220 242 0.97 4 14 0.00034 0.019 15.6 0.8 1 23 253 275 253 275 0.97 5 14 6.6e-05 0.0036 17.9 1.0 1 23 294 316 294 316 0.99 6 14 0.00034 0.018 15.6 2.4 1 23 328 350 328 350 0.98 7 14 0.01 0.55 11.0 4.9 1 23 356 378 356 378 0.97 8 14 5.4e-05 0.003 18.1 2.3 1 23 384 406 384 406 0.98 9 14 2.1e-07 1.2e-05 25.7 1.7 1 23 412 434 412 434 0.95 10 14 4e-06 0.00022 21.7 3.7 1 23 440 462 440 462 0.98 11 14 5.8e-06 0.00031 21.2 0.4 1 23 468 490 468 490 0.97 12 14 6.6e-06 0.00036 21.0 2.5 1 23 496 518 496 518 0.97 13 14 1.1e-07 5.7e-06 26.7 1.3 1 23 524 546 524 546 0.99 14 14 0.0075 0.41 11.4 0.7 1 20 552 571 552 574 0.94
Sequence Information
- Coding Sequence
- ATGTTAGACTTCGAAAGATTGTGCCGTACTTGTATGAAGACGAATAATGAAGTTGGTCTCATTAATTTGTTTGGCCCTTTGAAAATCGAGGACAATTGCTCGTTAAAATTAGCAGATGTCCTAAAAGATACCATCACATTGCAGATCGATGAAGGTGATGGTCTGCCTCAAAATGTGTGCAATGAATGTTTAAAAAATCTGCAAATAATGTATACATTCCGGGCTCAAGCACTCAATTCTGAAATTGAATTAAAAAAGATAGCTTCAACATGCACTATTAAAAATGAAACAGAATTAGAGGTGAAATATGAAAGTGATTTTGACTATACACATTCCTATGAGGACTTCATATATGAATATGACACACACACAGCGAAAGTTGAAGCTGATGATAATTTATCAATGTATATTTGCAATGTATGCAATAAGAAGTTTACCAAAAGAGAGAGGTTTCTAAAACACCTGTCAAATCACGAAAACCCAAAATTTCCATGTTCGTTATGTAAGAGGATATTTAAAAAACAGGCCTCTTTACAAAGACATTTAGATAAACGTCACAATGATAATATAAGTGATCCCAGTTTAACTAATAGTATCCTGAATGATGCAGTTGGAGACTTAGGAGTGAAAGTTGAAATTGACAGTATAAATGAACACTACCAATGCTCCGAATGTGGTATGTTGTTTGATAATCAACAATCCATGTTGCAACACTTTAAAGAACATACTCAATTGAATTCTGATTTACAACAAGTTTACAGCTGCGTCAAATGTCTAATAAGTTATCCAACTCAACAGCAATTAAAAAAACATATGGAAAATCACAATAATGACAAAAAACATGGTGACCTATTAATAATGAAGTCTGAAAGCAAGCAGTATGAATGTCCAGAATGTCATATTGTGTTTGAAAAGCAGAGATCCCTGGGATCACATTTAAAAAAACACAAAGTGAAAATGAATATCAAAACAGAGGGTGCATATTACTGTGGTCATTGCAACAAAGGTTTTGGCTTGAAGACGCTTCTCAGAAGGCATGTGAAGTTGCACTTTGACGAACGTCCATTCCATTGCACCAAATGCCCAAGCAGTTACACACGTCACGATCAGTTGGTTATGCATCTCAGTAAACACAATGGTGTAAGGAAATATGCCTGCTCGCAGTGTGAGAAAGCATTTACACAACTCTGTAGTCTGAAAGACCATGAAAGGACTCACACGGGAGAAACCCCCTTCCTCTGTTCCCAATGTGGCAAGGGGTTCAGCAACAGCTCCAATCTGAGACAACATTTGAAGCGGCACTCTGGACTGAAGCCATTTACTTGTAATCTGTGCCCTAAGAGCTTTTGTACTAAAGGGCAAATGAAATCCCACATGGACACTCACGCAGGAGTGCACCCATATAAATGCGATGTCTGCGGAGCGAGCTTCACTAAACCAAACTCCTTGAAGAAACACTCCCTCATACATCTGGGCATCAAGCCGTTTGCCTGCGACAACTGTGCTATGAGGTTCTCATCAAAAGACCACTTGAAACGTCACCAGCGTATACACACGGGCGAAAAACCGTACCGCTGCCCGCACTGCCCGCGCGCGTTCACGCAGAGCAACGACCTGGTGAAGCACGTGCGCACGCATCTCGGACAGAACATCTACCAATGCACAGTATGCCAGGCGAAATTCCGCCTCATGCGGGAGCTTAAACGCCACTACCCGGTGCACTATATCAACGGGGTAGATCCCAACCCTGTGGAACAAATAGAAGCACCCCTTGTTATACTGAAGGAGTGCGAACAGGACATAGACAACAACGTACCGACAGATGGACAGATAACTATAACATTTAATAGTAACGTTCTAGATAAGAATAGCATTGGTGATATAACTATTAATATTGAACCGGGAAAGATTAGCAACTAG
- Protein Sequence
- MLDFERLCRTCMKTNNEVGLINLFGPLKIEDNCSLKLADVLKDTITLQIDEGDGLPQNVCNECLKNLQIMYTFRAQALNSEIELKKIASTCTIKNETELEVKYESDFDYTHSYEDFIYEYDTHTAKVEADDNLSMYICNVCNKKFTKRERFLKHLSNHENPKFPCSLCKRIFKKQASLQRHLDKRHNDNISDPSLTNSILNDAVGDLGVKVEIDSINEHYQCSECGMLFDNQQSMLQHFKEHTQLNSDLQQVYSCVKCLISYPTQQQLKKHMENHNNDKKHGDLLIMKSESKQYECPECHIVFEKQRSLGSHLKKHKVKMNIKTEGAYYCGHCNKGFGLKTLLRRHVKLHFDERPFHCTKCPSSYTRHDQLVMHLSKHNGVRKYACSQCEKAFTQLCSLKDHERTHTGETPFLCSQCGKGFSNSSNLRQHLKRHSGLKPFTCNLCPKSFCTKGQMKSHMDTHAGVHPYKCDVCGASFTKPNSLKKHSLIHLGIKPFACDNCAMRFSSKDHLKRHQRIHTGEKPYRCPHCPRAFTQSNDLVKHVRTHLGQNIYQCTVCQAKFRLMRELKRHYPVHYINGVDPNPVEQIEAPLVILKECEQDIDNNVPTDGQITITFNSNVLDKNSIGDITINIEPGKISN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01021512;
- 90% Identity
- -
- 80% Identity
- -