Basic Information

Insect: Musotima nitidalis
Gene Symbol: -
Assembly: GCA_949126915.1
Location: OX421440.1:864607-866088[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.003 0.27 12.6 0.6 2 23 60 82 59 82 0.95

2 14 0.00098 0.088 14.1 3.0 3 23 91 112 90 112 0.95

3 14 0.0013 0.12 13.7 3.7 2 23 119 141 118 141 0.91

4 14 1.4e-05 0.0013 19.9 0.6 2 23 149 171 148 171 0.97

5 14 9.2e-05 0.0083 17.4 1.4 2 23 180 202 179 202 0.94

6 14 0.031 2.8 9.4 2.1 1 23 209 232 209 232 0.97

7 14 0.00012 0.011 17.0 1.2 1 23 237 260 237 260 0.98

8 14 3.2e-05 0.0029 18.8 0.1 2 23 276 298 275 298 0.95

9 14 1.1e-05 0.00094 20.3 1.1 2 23 306 328 305 328 0.96

10 14 7.9e-06 0.00071 20.7 1.0 2 23 334 356 334 356 0.96

11 14 0.019 1.7 10.1 5.3 2 23 364 386 363 386 0.95

12 14 3.4e-06 0.0003 21.9 1.2 2 23 393 414 392 414 0.97

13 14 0.0011 0.099 14.0 0.9 2 23 421 443 420 443 0.96

14 14 0.12 11 7.5 0.2 2 21 458 477 458 478 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.003	0.27	12.6	0.6	2	23	60	82	59	82	0.95
2	14	0.00098	0.088	14.1	3.0	3	23	91	112	90	112	0.95
3	14	0.0013	0.12	13.7	3.7	2	23	119	141	118	141	0.91
4	14	1.4e-05	0.0013	19.9	0.6	2	23	149	171	148	171	0.97
5	14	9.2e-05	0.0083	17.4	1.4	2	23	180	202	179	202	0.94
6	14	0.031	2.8	9.4	2.1	1	23	209	232	209	232	0.97
7	14	0.00012	0.011	17.0	1.2	1	23	237	260	237	260	0.98
8	14	3.2e-05	0.0029	18.8	0.1	2	23	276	298	275	298	0.95
9	14	1.1e-05	0.00094	20.3	1.1	2	23	306	328	305	328	0.96
10	14	7.9e-06	0.00071	20.7	1.0	2	23	334	356	334	356	0.96
11	14	0.019	1.7	10.1	5.3	2	23	364	386	363	386	0.95
12	14	3.4e-06	0.0003	21.9	1.2	2	23	393	414	392	414	0.97
13	14	0.0011	0.099	14.0	0.9	2	23	421	443	420	443	0.96
14	14	0.12	11	7.5	0.2	2	21	458	477	458	478	0.93

Sequence Information

Coding Sequence: ATGGATGACGCAATAGAAAAAGTTTTCATCAAAGAAGAACCGAATAATGCTCATACCTCTACAGAAATTGTGAAATTGGAATCAATTAGCTCTGAAGATGACGAGAAACCCGAAAAAAACCATATGGACAAAGTTCAAAGTGAAGTTAAATTCGTAAACGGCAAGAGAAATCGGTTACCGTGTACTATTTGCGATGGCACATTCAAAAACAGAGCTATATTGAAGCATCACTTGCAATCAGTGCACGCATCAGCCGAAGATTCGGTGGACTGCAAACAATGTTTTCGGACGTTCAAATCCATAAGCCATCTACGTTCTCATGTCTCCTCAGTCCATGCTGCAATCAAAATAGTTCAATGTAAACATTGCAACCGCGAATTCGAAACTAGAAAAAAGCTTAATAACCACGTATTCTACACACACCCGGCACCTGAAGAAAGTGTAACTTGCAATGTATGCTCAAAGGTATTCAAAGCGAAATATCGTTTGAAAATCCATATGCGTATGGTGCATACCAAAGGTGTTTCAGAAAAGCAAACTTGCCCTCATTGCAATAAGGAGTTCAAATCCGATGTTCTGCTCAAAAGACACGAGAAATGGGCTCATCCCCCAGATGGAATGTCCTATCGATGTCAGCTATGCAGTAGGATACTTCCTTCGCTACCTTGCTACAAGAAACACATGAAAAACGTTCATGGCATGACTCACTTTACATGCAACGTATGCAGTAAACTTTTCCAGTCAGAATACACTCTTGGAAGACATATGAAGACCGTACATGAAGGTGTTAAACTTGAAAGAAAAGAGTACAAAGCAGGAACTATACCTTGCACAGTTTGCGGCAAAATGTTCGCGACTAACACAGCGTTGTCTTGGCATTATGAGCGTTTGCATTCCGAAAATAAAATCGACACAACTTGCCATTTATGTCCGAGAGAATTCAACGACACGAGCGCTTTGAAACGACACATGGAATCTGTGCATTCTATGAGGAAAGCCAAGTGTGATTTGTGTCCTAAGACTTTCAAATCCTACATCAGCTTACAAAGACATATGACAGTTACCCACGCTCCTCCGGAAGCGGCGAAAACTTGTGAAATATGTCATAAAACGTTTAAATGTGCTATGCATCTAAACATTCATATCTACTCGGTACACCCGAAAGAGGGAAGAGTTACTTGCGAGATTTGCAAAAAAGACTTTtcgtcaaaaaagtatttagtcaAGCATATCAAATCTCACAATAACAGCAAGGATGTTCCTTGTGGCATTTGCGGGAATTACTACAAAAGCTTCCACGATATGAAGAGACATATAAGGAGAATACACTTTAAACAAATAGCAAAGAAAGGCTCGGGTAGTTTTATGAACACGTGTTTAAAATGTGGATTAAGTTTTGAGGTTATTGAGGAGTTCCATTCGCATATAATGAGTTGTGAAGTTAACGTCGGAGTTACGGTTAAAGTTGAAATTATGGAATAG
Protein Sequence: MDDAIEKVFIKEEPNNAHTSTEIVKLESISSEDDEKPEKNHMDKVQSEVKFVNGKRNRLPCTICDGTFKNRAILKHHLQSVHASAEDSVDCKQCFRTFKSISHLRSHVSSVHAAIKIVQCKHCNREFETRKKLNNHVFYTHPAPEESVTCNVCSKVFKAKYRLKIHMRMVHTKGVSEKQTCPHCNKEFKSDVLLKRHEKWAHPPDGMSYRCQLCSRILPSLPCYKKHMKNVHGMTHFTCNVCSKLFQSEYTLGRHMKTVHEGVKLERKEYKAGTIPCTVCGKMFATNTALSWHYERLHSENKIDTTCHLCPREFNDTSALKRHMESVHSMRKAKCDLCPKTFKSYISLQRHMTVTHAPPEAAKTCEICHKTFKCAMHLNIHIYSVHPKEGRVTCEICKKDFSSKKYLVKHIKSHNNSKDVPCGICGNYYKSFHDMKRHIRRIHFKQIAKKGSGSFMNTCLKCGLSFEVIEEFHSHIMSCEVNVGVTVKVEIME

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01020519;
90% Identity: iTF_01020519;
80% Identity: iTF_01020519;