Mnit004071.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_949126915.1
- Location
- OX421416.1:2121821-2128712[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-23 2.7e-19 70.4 3.1 138 277 285 434 276 447 0.80 2 2 0.5 8.2e+03 -3.4 7.0 128 166 473 511 449 520 0.59
Sequence Information
- Coding Sequence
- ATGATTAATGACCTCCCTCAAACTGTTAGATTTTCCGAGTGCCAACTTTTTGCGGACGATTTTAAACTTTACCTTGCAATAGGAAAAGATGCGAAAGCTGACGCCCTGCGTCTGCAAAGTGACATAGATGCCGTATCCCATTGGAGCACATGTAACCGTATGCCTTTTAACCAAAACAAATGCAAAATCATGACATTCgcacgtaaaaaaataataaagactgattataaattatttgatgttTCTATGGATACAGTTGACGACATAAGAGATTTAGGCTTAATGTTAGATATAAAGATTGACTTTCATAagcacataattaatatttgcaaaTCAGCAAGTAGATTATTGGGATTCATTATTAGAACATCTAATGAGTTCAACAACACGTCAGTGGCTAGAGTGTTGTATAATGCTTACGTACGCAGCAAACTTGAATATGCGGCGATCGTGTGGGATCCTcatgaaaaaaagtattgccTTATGCTGGAAAGGATACAACGGAAGTTTGCACGGTTCTTGTACAAGAAAAAGTATGGGTATTATCCCTTTTTATATCCCTCTTTATTCGTCATTGGTATGGTGGACTTCGATACACTCGCTCTAAGAAGAAAAATGACTCTAGTTGAGCACTACCTCGCTATTATTTATGGTAAGGTAGATTGTCCACAAGTACTGGAGAAATTGTGCCTGTGTGTACCTACACGCATCCCTCAGTGCCCTTCGGGCCTGGTGGCGCCTCGGCGGCGGCCGCGCTTGTTGCAGAGGCCCTGCACGCGCACCGTGCACGCCGCCCAGGCCCCGACCGTGCGAGCTCTGCGCCTGATCGGGGACATGCTCGCTGAATATGACAAAAGAGAACACAAAGAAAAATGCTCGTCCCATGAGCGCCTAAAGCGGGAGCAAGCTTCCCTCACGCGGGACGTGGCCGCAGCCCGAGCCGCGGTGCGCGCCCGGGACGAGGCCGCCGCCACTGCGGGCTTCGCCTTTGTTGACGCAGCCACCGTGCCTGATGCACTGCCCAATGGACATGCGGATAACGGCGACAGCGAGGGGCCGCGCGAAGGACCAGCGTTGGCTTTGGTGTCGCATCAGTCCGAGCAGATACTTAACGACGCGGGAGAAGGCACACTAGACGTGCGGTTGCAGAAACTCCTCAGTTCGAAGAAGTCGCTAGAGTCTGAAGTACGGCAATTGAAATTGCAACTAAACGAAGAACGCGCACACAACGGGTCCAGCGCAGGGAACAACCACCACGAAGCCGAGTTGGAGACGCTGCGGCGGAGTGTAACCGAGGCGAAGGGCCGCGCGGCCCGCGCCGAGGCGGAGGCGGCGCTGCACGGGGCGGCCGTGGCGCGCCTCGAGGCGCAGCTGGCCCGCCACCGCGCGCGCCAGGACCTGCAGGACGACCACGAGGACCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGCGCGGGAGGCTCTGAACCGAGTGGAAGAACTAGAAACTGAGAACAGCCACTTAACAAAGAGGCTGGACAAGCTGAAACACGCAAAGTCcgcgcttttgaaagacctgtGA
- Protein Sequence
- MINDLPQTVRFSECQLFADDFKLYLAIGKDAKADALRLQSDIDAVSHWSTCNRMPFNQNKCKIMTFARKKIIKTDYKLFDVSMDTVDDIRDLGLMLDIKIDFHKHIINICKSASRLLGFIIRTSNEFNNTSVARVLYNAYVRSKLEYAAIVWDPHEKKYCLMLERIQRKFARFLYKKKYGYYPFLYPSLFVIGMVDFDTLALRRKMTLVEHYLAIIYGKVDCPQVLEKLCLCVPTRIPQCPSGLVAPRRRPRLLQRPCTRTVHAAQAPTVRALRLIGDMLAEYDKREHKEKCSSHERLKREQASLTRDVAAARAAVRARDEAAATAGFAFVDAATVPDALPNGHADNGDSEGPREGPALALVSHQSEQILNDAGEGTLDVRLQKLLSSKKSLESEVRQLKLQLNEERAHNGSSAGNNHHEAELETLRRSVTEAKGRAARAEAEAALHGAAVARLEAQLARHRARQDLQDDHEDQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKHAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -