Mnit004073.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949126915.1
- Location
- OX421416.1:2132396-2143280[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.3 4.9e+03 -2.6 0.1 253 281 77 106 64 109 0.49 2 2 2.7e-52 4.5e-48 164.9 11.3 1 138 124 254 124 258 0.94
Sequence Information
- Coding Sequence
- ATGATGGATAAGTTTTCAACATCTGATAACAGTGAAGAGGAAAATGGTGGGGCATTCACCGACGGCGATTTCGGCGATTCCGACGAAGATACAATTATAGAATGTGTTCATGATAAACCCCAAGTTCCCAACGAAACTGTAAATGGCAATGTGAAGAAAGAAAATGGGTTTTCGGACAATAATTACTCGCCAAAACTGAATGGCTCAGCAAATCAGTCACGATATAATGGCAACAAATTTCACGAAAATGGACACTCCAGCAAAGTAGATGGTCAGAACAATAGCGAAAGTGTATCGGAATTGCGAAGAGATTCCCACGGGGACCTGAATCCATCCATTGTTGGAATCATCGGCGGTCAACATaatcatGCTGAACAGCGATTAGCAGCGCGGCGAGCCGCTCGGGCGGAGGCGCGGGAGATCCGCATGAGGGAGTTGGAGAGACAGCAGCGTGAACAAGAGGACCATGCGGACAAGGCCTATGACATGTATGCGGAGTCAGtggggcggcgcggcgggtcccgGCTGGCCGCGTTGTCGCCGAGCGCGCTGCACTCGCCGAGACGCAGCTCCGAGGACTCCGCCGATGATGTGTTCAGCTTCAAAGACCTAAGGAACGAGTTAAAAGAGCTAGAGGAAAAGTTCCGAAAGGCGATGATCCTGAACGCTCAGCTGGATAACGACAAGGCTGCGCTCGGCTACCAGCTCGAACTCCTCAAGGACCGGATAGAGGAGCTGCACGAGGAGTATGCACAGCTGCAGGTGGGTTTCTTAGGCTGGCGGTGTTACAAGAAGGGATAG
- Protein Sequence
- MMDKFSTSDNSEEENGGAFTDGDFGDSDEDTIIECVHDKPQVPNETVNGNVKKENGFSDNNYSPKLNGSANQSRYNGNKFHENGHSSKVDGQNNSESVSELRRDSHGDLNPSIVGIIGGQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAESVGRRGGSRLAALSPSALHSPRRSSEDSADDVFSFKDLRNELKELEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQVGFLGWRCYKKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -