Basic Information

Insect: Musotima nitidalis
Gene Symbol: TIP4-2
Assembly: GCA_949126915.1
Location: OX421416.1:21202251-21211950[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.8e-07 6.7e-05 23.4 0.0 3 35 10 43 8 46 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.8e-07	6.7e-05	23.4	0.0	3	35	10	43	8	46	0.89

Sequence Information

Coding Sequence: atgtctaAAAAACGACAATACGATAAAGAGACTATAGATATagctcttaaatttattgagAATAAAGAGGGTTCAATTCGACAAGCGGCAAAACAATTTGGTGTGCCTAGAAGTAGCCtccaatttaaaattcaaaacccTGACACAAAATTTAAGTCTGGACCAGATCCAGTGCTAACTGAAGCCGAGGAAAATAGCTTATGTGACTTTATCATACAACTTTCAAGACGTGGCTTCCCGAGAAAGAAAGAAGATATTCAATTGTGCGTCCAgaattttttgcaacaaaaccCGAGACCCAACCCCTTCCGAGACAATAAACCAGGAGATGTGTGGTTTAAATCTTTTCTGAAAAGACACCCTAATATTGCAATTCGAACATCAGAAGGAGTTACCAATGCAAGTGCATGTGTTTCTGAACAAGATCTTAGAAAGTGGTTTCAGGAAATACAGAAGTACATTGACGATGAAAAGCTAAATGACGTCATTCAAGATCCCATAAGAGTGTTTAATGCTGATGAAACTGGATTTAACATTTGCCCGAAAACAGGCAAAGTACTGGCTGAGAAAGGGTGCAAAAACGTGTACCAGATTGAAAAAGGATcctcaaaagaaaacattacagttttatttacgTTTTCTGCTGCTGGACACGTCTTTAGACCGATGATCATCTATCCTTATAAACGTATACCTGACAGAGTCTCATTGAGTGTGCCATCTGGTTGGGGAATAGGGCGAAGTGACACAGGTTGGATGACTGCAGCGgttttttatgattatatttGTAACTGTCTGCaccaacaaattttagaaaacaatatCCCACTTCCTGTAATTTTGTTTGTCGACGGACACAAAACacatataacaatagaagtatCAGAACTATGCCGTCGTCTTAAAATACATCTAATAGCACTTTATCCAAATGCAACTCGCATACTACAACCAGCAGATGTTGCAGCTTTTCGCCCAATAAAAGCTGCTTGGAAGAAGGAATTACGCGATTGGTACACTAGAAATAATTACCAGAAGAGTCTGACCAAAGAAACTTTTGCTCCATTGTTAAAAGCAGTTATAGACTCGTGTTCTAAGAAAGAGACATTAATAAACGGATTCAGAGTTTCAGGTTTATGGCCATTTGATCCAAATAACGTCGATTTTAGCAAATGCATTACAAGAGTAAACCAACCTGATGACACATCGACGTCAGTAGCAAATGAGCAGAATATGAGTGTGCTGACATATTCAGACTTTTGTGACATTATTGGTGAAACAATTCTTGAAAAATGTCGAACAGTCTCGTCTATTGTAGAGTCAGATGATAACTTTATTGCAATTTACAATTTATGGCAAAGATTTGAGGCAGCATcggaaaacaaaaatagttaTAGAACTAATAAAGACATGGTCCCTGAATCTTATGACCAACCGACCATGATCGTAGAAGATAATTATCTGAGTAATATTATAGAGGAAGATGAAAACCCTAGGATGATTCTTGATGAATTTACAGAGCGCGGCGGGGGGGCTGGGTCGGGCGGGGGGGCTGGGTCCGGCTGGTCGTGGCGGTGGCGCGAGGCGGGGCTGGGCGCGCCGCTGTGGGCCGCGGCCGGCGCCGAGCTGCTGGGCACGGCGCTGCTGGTGACGCTGAGCTGCCTGCTGCGCGAGGTGGCGCCGCCGCAGCACCAGCCGCTCGCCAACGGCCTCATCGTCGCCATGCTCGTGCAGTGCTTCGACCACCTGTCGTGCGCGTTCCTGAACCCGACGGTGACGCTGGCGGCGGTGGCGCGCGGGCGGCTGCGGCCGGCCAGCGGCGGCGTGCTGGGCGCGGCGCAGCTGGCCGGGGGCTGCGCGGCGCCGGCGCTGCTGCGGCTGCTGGCGCCCGGCCCGTGCCGGCCCTGCCTCACGCTGCCCGCCTCCGACCTGCCGCTCTATAAGGTTGTGTTCTGTTGGAAGGCAGTGTGCGTGGAGGCGGTGATGAGCGGCTGCCTGGTGCTGGCCAACTGTGCGTCGTGGGACGCGCGCAACCGCCTGCTGGCCGACTCCTGGCCGCTGCGTATCGGCCTCATCGTCGCGCTGCTCAACTTCCTCGCGGGTGAGCTGACCGGAGCCAGCATGAACCCGGCGCGCAGCTTCGGGCCGGCGCTGTGGGCGGGAGACTTCAGCCACCACTGGGTGAGTGCCGCGCCGCGTTGCTCCACTTAA
Protein Sequence: MSKKRQYDKETIDIALKFIENKEGSIRQAAKQFGVPRSSLQFKIQNPDTKFKSGPDPVLTEAEENSLCDFIIQLSRRGFPRKKEDIQLCVQNFLQQNPRPNPFRDNKPGDVWFKSFLKRHPNIAIRTSEGVTNASACVSEQDLRKWFQEIQKYIDDEKLNDVIQDPIRVFNADETGFNICPKTGKVLAEKGCKNVYQIEKGSSKENITVLFTFSAAGHVFRPMIIYPYKRIPDRVSLSVPSGWGIGRSDTGWMTAAVFYDYICNCLHQQILENNIPLPVILFVDGHKTHITIEVSELCRRLKIHLIALYPNATRILQPADVAAFRPIKAAWKKELRDWYTRNNYQKSLTKETFAPLLKAVIDSCSKKETLINGFRVSGLWPFDPNNVDFSKCITRVNQPDDTSTSVANEQNMSVLTYSDFCDIIGETILEKCRTVSSIVESDDNFIAIYNLWQRFEAASENKNSYRTNKDMVPESYDQPTMIVEDNYLSNIIEEDENPRMILDEFTERGGGAGSGGGAGSGWSWRWREAGLGAPLWAAAGAELLGTALLVTLSCLLREVAPPQHQPLANGLIVAMLVQCFDHLSCAFLNPTVTLAAVARGRLRPASGGVLGAAQLAGGCAAPALLRLLAPGPCRPCLTLPASDLPLYKVVFCWKAVCVEAVMSGCLVLANCASWDARNRLLADSWPLRIGLIVALLNFLAGELTGASMNPARSFGPALWAGDFSHHWVSAAPRCST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01437914;
90% Identity: -
80% Identity: -