Mnit011516.1
Basic Information
- Insect
- Musotima nitidalis
- Gene Symbol
- -
- Assembly
- GCA_949126915.1
- Location
- OX421423.1:7603710-7604345[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.5e-10 2e-07 31.4 0.0 1 37 15 51 15 57 0.94 2 2 3 1.1e+03 0.3 0.0 22 30 142 150 128 151 0.78
Sequence Information
- Coding Sequence
- ATGTCTCGGAAGTATAATAGAAAAACACTGCGAGCATCATGGTCGCCAGAAGATTTAGAAGAAGCAATGGAAAAGGTAAAAAGCAAGACTATGGGTGTCAATGAAGCCTCCAGAAATTACCAGATTCCCTCCAGAACCCTCAGAAGACACCTTTTAACAGGCAAATCAAAAGTCCCTCTTGGTCGCAACCCAGTCTTTTCAGAAGAGtatgaaaaaaagttaacagcccatataaaaaaattagaaagagTAGGGTTTGCACCAGACCGACGAGATGTAAAGGAAATAGCTTTTCAATGGGCcacaaaacttaaaataaaacacccaTTTCCGGAAGAGTCTGGATTAGCGGGTAACGTCTGGTTTTCTGGATTTATGGCAAGAAATCCGGAACTAAGCCAGAGAAAGTCAGAAGGTTTATCCCTCGCACGAACTTATGGAGTGAACAGAAAGGATGTTCAAGATTTTTTCGACTTGTTAGCCAAAATCTATCAAGAAAATAACTTTGCATCCCACCCTGAAGACATATATAATATGGACGAGTCAGGCATCCAGGTAAACAACAAACCAGGAAAAGTGATAGCAACCAAAGGTGCGAAGGATGTATACACTCTCACAAGTTGTAAAAAAGGGTGA
- Protein Sequence
- MSRKYNRKTLRASWSPEDLEEAMEKVKSKTMGVNEASRNYQIPSRTLRRHLLTGKSKVPLGRNPVFSEEYEKKLTAHIKKLERVGFAPDRRDVKEIAFQWATKLKIKHPFPEESGLAGNVWFSGFMARNPELSQRKSEGLSLARTYGVNRKDVQDFFDLLAKIYQENNFASHPEDIYNMDESGIQVNNKPGKVIATKGAKDVYTLTSCKKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00637593;
- 90% Identity
- iTF_00637593;
- 80% Identity
- -