Mdom010269.1
Basic Information
- Insect
- Musca domestica
- Gene Symbol
- ZNF526
- Assembly
- GCA_000371365.1
- Location
- Scaffold18577:579615-595278[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.036 1.7e+02 2.1 0.0 26 43 291 308 286 318 0.87 2 4 0.0039 19 5.2 0.1 26 44 319 337 314 342 0.88 3 4 0.96 4.6e+03 -2.5 0.1 26 48 354 376 347 377 0.78 4 4 2.4e-07 0.0011 18.7 0.0 21 45 406 430 398 437 0.86
Sequence Information
- Coding Sequence
- ATGGAATCATTGTCACTGCACAAAATCTGTCGCATTTGTTTGAAAAGCGACATCCTTGTTTCCATCTATAgtccaacatttttaatacgaCCCATTGAAATGATGCAGAAGCTAAAAATAGCCAATTTTAATACAAACGATGATGCCTTTCCCGCCCTTCTGTGTCAATCCTGCTTATATCGCCTCTTGGATGCCTACAATCTACAACAATTGGCTGAGGCTTCTGAACGACGTTTGAGAGAATATTTCTTTGGTATTCCATCACAATCTACGATGAGCAGTCTGGGTTCGGTGCTGAATATATCCATCTCACCCAAGCCCCTGGAAACACCCGATGATAGTGTGTCAGTTGCAAATCTATGCGATATGATGTTCTATCGTGATGTCACCAATGATATAGTTGAAGTTGTCGGTGACGATGTGGAGTTGTTAAATGACGTTGAAATCGATGTTAGTAGCCTAACGCGCTCGGAGGCTGATGAAACGTTAAGTGAGGTGTTTGGTAGAAATTCAAGTGTATCAATGGATGCTACCTTAATTGGGACGTCTCATGATGAGGAAAAGCGATATGAAAATAAGAATAGTGGAAATAGTCTTTGTGAAATGCAGCAGCAAGTGGAGGGGAAAAAGAGAATACATGAGTCAACAAAGGGTCAAGGGCGAAGTGTTAAGAAAACTCTAAAAATACCAGATAAATGCTTAGATTGTGGAAAGGTTTTCCACTACAAGGGTTATTTGTTGATACACAAACGTGTCCACACCGGAGAAAGGCCATTTAAATGTGAGCTTTGCTCGCGAGAATTTATTACATCAACAAAACTTTTATTGCATCAACCTACACACAATGCGACAGATTGGCGCAAACGTTTTCAATGTGAAATTTGTTCGGCATTTTTTGCAACATCATCGAATTTCAAATCACACAAATTGACACACGCGACCGTTCGTAATTATTCATGTGAAATGTGTAAGATGTCATTTAAATCGcaacggaatttaaaacgacATCAAGCTGTGCATCAAGCCATCGATAGCGATGAACGGCAAGACAGTGAGATCTTTTGTCAAATATGTGGAAAATCATTTAGCAAACATGCATCATTGAGTGCCCACCTGACAATGGTGCATCGTCGTGTACGTAAACATAAATGCAGCGAATGTGATAAGATTTTTGGCAAGAAATCAAATCTTATCAACCACATGAGAACACACAGTGGCGAGAAGCCTTTCGAATGTCCCACATGCTATTGGAAATTTGCTCAATCATCGTCGTTGAGAAGACACATGAAAAAGCATAACAAAAGTGGTCCAGTAACATTATAA
- Protein Sequence
- MESLSLHKICRICLKSDILVSIYSPTFLIRPIEMMQKLKIANFNTNDDAFPALLCQSCLYRLLDAYNLQQLAEASERRLREYFFGIPSQSTMSSLGSVLNISISPKPLETPDDSVSVANLCDMMFYRDVTNDIVEVVGDDVELLNDVEIDVSSLTRSEADETLSEVFGRNSSVSMDATLIGTSHDEEKRYENKNSGNSLCEMQQQVEGKKRIHESTKGQGRSVKKTLKIPDKCLDCGKVFHYKGYLLIHKRVHTGERPFKCELCSREFITSTKLLLHQPTHNATDWRKRFQCEICSAFFATSSNFKSHKLTHATVRNYSCEMCKMSFKSQRNLKRHQAVHQAIDSDERQDSEIFCQICGKSFSKHASLSAHLTMVHRRVRKHKCSECDKIFGKKSNLINHMRTHSGEKPFECPTCYWKFAQSSSLRRHMKKHNKSGPVTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01019628;
- 90% Identity
- iTF_01019628;
- 80% Identity
- iTF_01019628;