Mdom014053.1
Basic Information
- Insect
- Musca domestica
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_000371365.1
- Location
- Scaffold19024:96089-110611[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.13 1.8e+03 -2.4 2.9 240 271 41 71 24 105 0.46 2 5 0.0056 80 2.0 1.7 41 112 167 240 138 246 0.75 3 5 0.024 3.4e+02 -0.0 1.9 27 84 220 276 209 312 0.68 4 5 6.1e-113 8.6e-109 363.1 27.8 1 299 326 625 326 626 0.92 5 5 0.067 9.5e+02 -1.5 3.5 220 244 654 678 629 699 0.47
Sequence Information
- Coding Sequence
- ATGTCggggaaacaacaacaacaaccgtcAAATCAAGCCCCATCCAATGACAACCCTGGCGGTGGCGGTACAAAAGCGAATagtaaaacaaatcaaaaaagtaaaaaagtgatTAATAAGAAAAGTTTGAAGGcaaaactgcaacacaaatcaactaaaaacaacaattgtaatacaaccagcaacaacaataacaacaacgataatggcagtaacaacaaaaataacaacgatgtcaatgagaaaaaaaatgtaaacgatGAAGTCATCGAGGAGTTTGATTTTTGTGCCAGTGATTTGGCCGAGTTGGATGCAGCAACGGCAGCTGCTGCAGCCACTGCATCCCCCCTTACTCCAGCAAATGGCGATGATCACAAAATTGACCAAGATTTGGCTATTGAAGAATGCGAGGAAGCTAAAGAACAAACAATGGTAAAAGACGAGGGCGGCGAACATGTTACCCCAGTTGTTGATAACGAACAGGTGGATAGTACAACGCAAGCAAAATCAGCGGGACTCATTGATAATGACGGTGATAAACACGAACTGGCtggaacaacaactacaacaacagcagaagcaACGACGACAGAAAAAAGGGAGTCACCGCCACCACCATTGGTGCTGACTAAGAATACCGACGAAGTGTgcgaagaagacgaagaagtaaaagaaaaaattagcaGCAACATGGTTGCAAATATGAAATCAAATGAAGACACCAATGccgccaccgccaccaccactgGCAACAACAACCATAATAACATCCAACCAACAACGAAAATGTCAACGCCAACGCCACATCAGACAGACAACGACTCGAGTTCAGCGATTCTCCCTTCAACAAACGTTGCAGCGAAGAACACAACGTCAAGTAacaatgatgctgatgatgacaaCGGTTCCGCCGATGCCGACGATTACATTGACGATGGACTTTTGGTTCAATTTCTTGACGAAGCAAATAATATTGCTGAAGCAAGATTGGCGGCTCGTAGACAGGCCCGTGCCGAGGCACGTGAAATTCGAATGCGAGAACTGGAaaggcaacaacagcaacaggagTTAAATGCCGATCGGGTATTCGATCTGCATACCACAGCATCGGGCATAGATCCATTGTCTCGGACAAGACTGGGAATGGGCAGTGCATCACCGGCAATCAGTGGCTTATTGAACTCTTCACGAGTTGGTAACTCAATGTCTTCAAGACGCAGCAGTGAAGATTCCCTCGAAGAGGAAGGTCGCAGTTTAAGAGACATACGCCACGAACTGAAGgATGTGGAGGAACGATTTCGCAAGGCCATGATAGCAAATGCCCAGTTGGATAACGAGCGTGCATCACAGACGTATCAAATTCAGTTGTTAAAAGACAAATTGGAAGATATCGAAGAATCGTATGCCCAGTTACAGCGtgaattcaaagaaaaatcaCGTGAATGCAATGCCCTGAAACGGTCGTTGGATAAATTAACGGAAGAATTGAAACTGGTGCAGGGTCAGCTAAACGAACGGGATACACTGATTGAGGAACAAGGCCTTGTCATTGTGGCCGTTGAAAACGAGGATGGCACAGATGCCAAACGTGCTCTAGTCAGCGTAGAAAATGCACAATTGTTAGGATCTGTTCAGGGTTCTTTAGatGTACGACTTAAAAAATTCACCGAAGAAAAACAGCAGTTACAATCCGAAGTACAACAATTGCAAGAGCAATTGGAAACGTACAAAAGTCAAGGCAAAGGTCGGGGTAGGGGAAACTCTCTAAACGGGCCATTGGGTTCAGATGATGATGACTATGAAGCTCAGAGGGAAGCCAACAAAATAATCTTAGATTACAAATATAAACTGCAAAAGGCCGAACAAGAAATCGCTAGTCTACAATCAAGTTTAGCTCGTTCCGAAACTCAAGTTATACGATATAAGAGTACAGCCGAGGCAGCTGAGAAAGCAGAAGCTGAACTGAAAATTGAGAGAAGGAAACTGCAAAGAGAGaatcgaGAGGCCATGGAAAAACTTGAGGAGCTGGAAACGTCAAATAATCATTTGATCAAGCGTTTAGATAAGTTAAAGAATGCCAAGAGTGCTCTTTTAAAGGATCTTTGA
- Protein Sequence
- MSGKQQQQPSNQAPSNDNPGGGGTKANSKTNQKSKKVINKKSLKAKLQHKSTKNNNCNTTSNNNNNNDNGSNNKNNNDVNEKKNVNDEVIEEFDFCASDLAELDAATAAAAATASPLTPANGDDHKIDQDLAIEECEEAKEQTMVKDEGGEHVTPVVDNEQVDSTTQAKSAGLIDNDGDKHELAGTTTTTTAEATTTEKRESPPPPLVLTKNTDEVCEEDEEVKEKISSNMVANMKSNEDTNAATATTTGNNNHNNIQPTTKMSTPTPHQTDNDSSSAILPSTNVAAKNTTSSNNDADDDNGSADADDYIDDGLLVQFLDEANNIAEARLAARRQARAEAREIRMRELERQQQQQELNADRVFDLHTTASGIDPLSRTRLGMGSASPAISGLLNSSRVGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQTYQIQLLKDKLEDIEESYAQLQREFKEKSRECNALKRSLDKLTEELKLVQGQLNERDTLIEEQGLVIVAVENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFTEEKQQLQSEVQQLQEQLETYKSQGKGRGRGNSLNGPLGSDDDDYEAQREANKIILDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLIKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -