Mdom009540.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Musca domestica
Gene Symbol
sip1
Assembly
GCA_000371365.1
Location
Scaffold20177:24945-29497[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 0.94 6.7e+03 -4.0 0.0 137 158 334 355 332 369 0.70
2 3 4.4e-96 3.1e-92 308.7 11.6 2 275 428 697 427 697 0.99
3 3 0.21 1.5e+03 -1.8 0.0 241 269 708 736 701 743 0.70

Sequence Information

Coding Sequence
ATGGGCGACGAGGAATATGAACGTTTCGAAATAACCGATTATGATTTGGAAAACGAATTCAATCCAAATCGTTTTAGGAAAAAGCAAAGTAAACAGCAGGCAATTTATGGCATTTGGGCTGATGACAGTGACAAggatgatgacgatgaagaCACGTCCAGTCGCGGACGCAAGGGACGTCGTCGCATGGGCCTGGGTGGTGGTCCATCGGGAAGCAGATCCAAAGATTATACAGCACCAGTAAGTTTTGTGGCCGGTGGCATACAACAGGCTGGCAAGAAAAATAAAGCCAAAGGCGAGGAAAAAGATGATGACCGAGATTCAGACGATGCCGAAAATCCCATTACCGATGAGGAGGATGAATTGAATGCCCATCCTGGTTTTGGTGCTGGTCAAAGGCCGACACTAATGGATGCCGAGTCACCACATACAAGTGAAGATTCTGAGGAGGAACCAGAACGTAGGATGCCACCACCATCGAAATCCAGTTttaaacaacagcagcagaccGGTCACCTTAAGGTTGGTGCCTGGGAGCAGCATACCCGTGGCATTGGTGCAAAGTTGTTGTTACAAATGGGTTACAAACCTGGCATGGGTTTGGGTAAAGATCTACAGGGTATTTCCCAGCCTGTGGAGGCTCATGTCCGGAAGGGCAGAGGTGCCATTGGTGCTTATGGCCCTGAAACGGCGGCCAGTGTGGGTGGTAAAGGGCACGCTCCCAAAATCGATGAAGATGTCCGCGAGGCAAAGGAATTCAAGGAGAAATTAAATAAGTGGAAGAAGGGAGGAGATGGTCGTTCCGATAAAAATGCTAAACGTTACTATTACAAATCTGTCGAAGAGGTCCTGGAGAAGGGCAAAAACTCGAATTTCATTATTGGCGATAAGATTAGCAAAAAGCTTGGCAATGTCCCTGTCATCGATATGACGGGCCCCGAGAAACGTGTCCTAAGCGGTTATCACGCCCTTGGCCAGTCAAAAGTTATGGAAGAAGATCTCTATGATGCGGTACAGGAAACACAGCCCAAGAAAACAACAGCCACATTTCAATTACCCGAACTTATGCACAATCTTTCGCTTATTGTTAATATGTGTGAACAGGATATTATCTCGCTGGATACGGCAGAGAATAATGCCAATGAACGCTACACGGCCTTGGAACAGGAAAAGAAGCAGTTGGAAGAAATTGTTAGCTTAGAAAGAAATCACATCAATACCTTGGATCATGTTCTATCCATGGTTGATGAACTAACTGCGGGTGGCGAAGATTTGAAGTTGTCACGGGCCGAAGAGATTTTCTTGGAATTACAGACAAATTACGCCGCCGAATATAAACAATTCGGTTTAGATGATTTGGCAGCTGGGGTAATAGCTCCTCTGCTGAAGCAACATTTGGCCGAATGGAAACCACTGGAGGCTCCCACACAATATGTGGATATTATTAAGAAATGGCGTACCATATTGGATGTCCAGAATGAGGATAATTCGGAGAAACGTTCAAATATTTTCGATCCTTACTCTTCGCTGATTTGGGCTGGCGTAATACCAAGTTTCCGTTCTTGTGCTGAATTTTGGGATCCCAAACATCATCAGTCGATGGCAGCTCTACTGGATTGTTGGGCACCGCTCTTCCCCTCTTGGATATTGGATTCGGTGTTGGAACAATTGGTGTTGCCACGTTTAAGTGCCGGTGTCCGTCAATGGGATCCCTTGACTGACACCGTGCCCATACACATTTGGATTTTACCATGGAATGCAATTTTGGGTCATAAAATGGAAGAGTTTATCTACCCGACAATCCGAGAAAAATTGGGTAATGCTTTGCGTGCCTGGTTGCCACAGGATCGTTCGGCCCGGGCCATGCTTACGCCATGGAAGGGGGCATTCGATGATCATCAAATGCAGTTGTTCCTGCTGACCCATATTATACCCAAGCTGCAAATGGTCTTAAATGAGTTCATCATAAATCCCCTGCAACAGGATTTGGaaCCCTGGAACCAGGTCTATGAATGGCATGAGTTAATACCACCCGGCCAAATGGCCCAATTGCTGGATAAATTCTTCTTTCCCAAATGGATGCAGGTATTGGTCATGTGGCTCAATCAATCACCAGATTATGTGGAAATTTCCCGCTGGTATAGCGGCTGGAAAAGTATGTTTTCCGAAGACCTATTGCGTGAGACCTGCATAAAAGAACATTTACGTCGTGCCCTGGAAATGATGCATCGTGCCACAGATCAAGTGGCAAATGTGCCGTCAAATTTGTCATCAACACCCACTATGACCACAAGTACCCCACCACCACCTCAGCCACCGCCACCTCCAATCTTATTGAATATGGATATGTCTGGTGCTGCCCCCGTACAATTGGAATTCAAGGAATTGGTTTCACGCAAATGTGCCGAACGGGGTATACTCTTTGCCCCGCTGCCGGGTCGCCGTGAAATGGGCAAACAAGTCTATCGTGTTGGCAAATTATATTGCTATATAGATCGTAACGTTTGTATGATAACCGATAGTACGTTTAAGAATTGGATACCCACACCGCTGCAGCCAATGTTGGAACGTGCTGTAACGGGAGTTTTAAATTGA
Protein Sequence
MGDEEYERFEITDYDLENEFNPNRFRKKQSKQQAIYGIWADDSDKDDDDEDTSSRGRKGRRRMGLGGGPSGSRSKDYTAPVSFVAGGIQQAGKKNKAKGEEKDDDRDSDDAENPITDEEDELNAHPGFGAGQRPTLMDAESPHTSEDSEEEPERRMPPPSKSSFKQQQQTGHLKVGAWEQHTRGIGAKLLLQMGYKPGMGLGKDLQGISQPVEAHVRKGRGAIGAYGPETAASVGGKGHAPKIDEDVREAKEFKEKLNKWKKGGDGRSDKNAKRYYYKSVEEVLEKGKNSNFIIGDKISKKLGNVPVIDMTGPEKRVLSGYHALGQSKVMEEDLYDAVQETQPKKTTATFQLPELMHNLSLIVNMCEQDIISLDTAENNANERYTALEQEKKQLEEIVSLERNHINTLDHVLSMVDELTAGGEDLKLSRAEEIFLELQTNYAAEYKQFGLDDLAAGVIAPLLKQHLAEWKPLEAPTQYVDIIKKWRTILDVQNEDNSEKRSNIFDPYSSLIWAGVIPSFRSCAEFWDPKHHQSMAALLDCWAPLFPSWILDSVLEQLVLPRLSAGVRQWDPLTDTVPIHIWILPWNAILGHKMEEFIYPTIREKLGNALRAWLPQDRSARAMLTPWKGAFDDHQMQLFLLTHIIPKLQMVLNEFIINPLQQDLEPWNQVYEWHELIPPGQMAQLLDKFFFPKWMQVLVMWLNQSPDYVEISRWYSGWKSMFSEDLLRETCIKEHLRRALEMMHRATDQVANVPSNLSSTPTMTTSTPPPPQPPPPPILLNMDMSGAAPVQLEFKELVSRKCAERGILFAPLPGRREMGKQVYRVGKLYCYIDRNVCMITDSTFKNWIPTPLQPMLERAVTGVLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01231578;
90% Identity
-
80% Identity
-