Mdei010701.1
Basic Information
- Insect
- Morpho deidamia
- Gene Symbol
- -
- Assembly
- GCA_029101505.1
- Location
- JAPJRL010000013.1:6107596-6126358[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0014 0.11 13.6 0.5 3 23 248 268 247 268 0.93 2 13 1.4 1.1e+02 4.2 2.1 5 23 280 299 276 299 0.88 3 13 0.74 60 5.1 0.5 1 23 303 326 303 326 0.91 4 13 0.0026 0.21 12.8 4.8 1 23 399 421 399 421 0.99 5 13 0.063 5.1 8.4 3.9 2 23 430 452 429 452 0.96 6 13 0.2 16 6.9 2.9 1 23 456 478 456 478 0.98 7 13 3.6e-06 0.00029 21.8 1.7 1 23 483 506 483 506 0.98 8 13 0.3 25 6.3 2.5 1 23 510 533 510 533 0.83 9 13 1 84 4.6 0.0 2 19 552 569 551 572 0.90 10 13 0.01 0.84 10.9 0.7 3 23 615 636 613 636 0.96 11 13 1.2e-06 9.4e-05 23.3 1.5 1 23 645 667 645 667 0.98 12 13 0.00039 0.031 15.4 0.7 1 23 673 695 673 695 0.96 13 13 5e-06 0.00041 21.3 2.6 1 23 701 724 701 724 0.98
Sequence Information
- Coding Sequence
- ATGTATGATCTCAAAGTGTGCACAGTGTgcttacaaaaaaatgttaaaatgtatAACTTAGATAGAAATGAATTAAGAAAAGACTACAATTTAATATCAGGCCTTaagACTCGTAGCGGAAATGGTTTACCTGAATACTTATGTTTTCAGTGTGTCGCTTATTTAAAAAGTTGCAAAAAGTTTCGTGAGAAATGTCAAAGGGCTTTCTTTGCTTTACAGGAGATATTACACAGAAATAAAGAGATAAGCAAATCCATAATTGATAATTTAGACTGCAATGCCTTAAAAATTGGCCCAAGCCTTTCTTATCTTGATACAAACattgttaaaacaaaatttgataatGTAAAGTTTAAATGGATGAAAACAATTCGCATGAATATAGAGCCCCAAGAAAATATACCAGTTATTCAATATGGAAGTTCTGACGCTAATTCCTTTGAAGCAGTCACAGATAAAGCTGGAAATGGAACTGTAAAAGATGAAACTGCTGAAAACATAGGTAATCTGGATGATGGTTATGAACAGATAAATGTGGACACTATCACAGAAAATTTGTATGATAATGAATTTTATGTCAATTCAGACAAAGATTTTGATAATAATGACATAGATAAAGGTGAAGCAGATGTAGATGGAAATAAGTTGGATGAGGAATATGCAACTATGGTCCCGATAACATTGAAAGAAGCTCATGCAGTTTCAGatgtttgtaaattattttcaagTGGAAAGAACCAATGTATAGTTTGTGGGAAATCGTACAACAGTGTGCAAAGACTGAAAGTCCATATGAGAATGCACGAAAAGCACGTCAGTGGAACACACTTATGTATTCtatgcaattattattataaaactgagtttctattaaaaacacATATGACAGATAAAcatatgtacaaatatttatGCAGAAAATGTCCAGAGGTAACTTACAATAGAACATCAGCTAAACAACATTATATCTGGACACATCTCCAAAAGGGCAGTAAAAAGAATGTTAACTGGTATAAAACCAGGCCCAAATGGCTGAGTAGTAAGGGGCTTAAAAAGGAGAAACTATATGTGCGCCCAGTCAAAAAACTAGCGAAGCTTCCCAAGGATTTCCCTGCATACTCCCCAATAAGTCAAGAGGAACAATATGCTTTGGTCCAGGAGAGGAAGACCACAAAGAACTATATGGAGTCACCTTTCAAGTGTCAACATTGCTTCAAAGGGTTTAGGGAAGCTATGACATTCGCTAAACACCTTAAGAAACATGATCCTAATGTTTCCGGCAGCCTACAATGTGACATGTGCAAGATTTATTGTACAAATTCAAGAAAGATGTACAAGCATATGAACATGTCACATCTCTTCAAGTATTCCTGCCAGCTATGCAGTTATGTCTGCTTTAATAgGGGTCAGGCGAAAATGCATTACAGATGGCATAAAAATGTGACGTATTCTTGTCCGCACTGTGGAAAGGTTTTTACTAAAGCATCAACCAGATTGACACACATCCGTATAAAGCATCCGTCAATGTTCATCTGCAATTTGTGCGGACACAGCTTTGTCAGTGAGAACGGCCTCTATTGCCACAAGAAACTGGCGCACAGTGTACAGGAGGTTGAGAGCAGTACAGGTGAAGTAGACACCTCGCATCGGCTGTATTGCAGGGAGTGTGGGATACAGTTCGTAGACGATGCCGCCTTCGCCACGCACTTCGGTTCATCGAACAAACACGCAGAAACCAACTTATCAATAAAACCAATAAGGTCTAAAAGCGAGCGCCCCCGAGGCAGACCGAGGCGGGACAACAGCGAAATCGTCAACACGGGCGTGGTGACTGCTTCCAACTGTGATATTTGTAAAAAGTATTTCCCGAACGACAAACAAGCGAGGCGGCATTACGAAACTGAGCATCCCGGTACGGAGTTCCTGAAGCGGTACATGTGCGATATTTGCGGGCACACCACTAAGCAATACGCCAACCTGACCGTTCACATGCGCACCCACACGCTCGAGAAGCCGTACGCGTGCCCGCACTGCGAGCGGCGGTTCAGCATGCCGAGCAACCGGGACCGGCATCTTGTTGTACACACCGGTGAAAAGAGATACCAATGCCAACACTGCAACCGTCGGTTTACCCAAAGCAGCGCGGTCAAGTTGCACATACAGACTGTTCATATGAAGATCCCTTACGCTCCCTGGGACAAGAAGAACCGCAAGCGACGCCGGGAGGTGGAGGTAGCACCACTCCCACCACCGGTGCCCACGCACAAGCTCGTGCTTGACACTGCGAACTACTTAAGTGCCTACATTACTTATAACGAGTGA
- Protein Sequence
- MYDLKVCTVCLQKNVKMYNLDRNELRKDYNLISGLKTRSGNGLPEYLCFQCVAYLKSCKKFREKCQRAFFALQEILHRNKEISKSIIDNLDCNALKIGPSLSYLDTNIVKTKFDNVKFKWMKTIRMNIEPQENIPVIQYGSSDANSFEAVTDKAGNGTVKDETAENIGNLDDGYEQINVDTITENLYDNEFYVNSDKDFDNNDIDKGEADVDGNKLDEEYATMVPITLKEAHAVSDVCKLFSSGKNQCIVCGKSYNSVQRLKVHMRMHEKHVSGTHLCILCNYYYKTEFLLKTHMTDKHMYKYLCRKCPEVTYNRTSAKQHYIWTHLQKGSKKNVNWYKTRPKWLSSKGLKKEKLYVRPVKKLAKLPKDFPAYSPISQEEQYALVQERKTTKNYMESPFKCQHCFKGFREAMTFAKHLKKHDPNVSGSLQCDMCKIYCTNSRKMYKHMNMSHLFKYSCQLCSYVCFNRGQAKMHYRWHKNVTYSCPHCGKVFTKASTRLTHIRIKHPSMFICNLCGHSFVSENGLYCHKKLAHSVQEVESSTGEVDTSHRLYCRECGIQFVDDAAFATHFGSSNKHAETNLSIKPIRSKSERPRGRPRRDNSEIVNTGVVTASNCDICKKYFPNDKQARRHYETEHPGTEFLKRYMCDICGHTTKQYANLTVHMRTHTLEKPYACPHCERRFSMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHMKIPYAPWDKKNRKRRREVEVAPLPPPVPTHKLVLDTANYLSAYITYNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01018001;
- 90% Identity
- iTF_01018001;
- 80% Identity
- -