Mach028319.1
Basic Information
- Insect
- Morpho achilles
- Gene Symbol
- -
- Assembly
- GCA_947086495.1
- Location
- CAMTZB010000028.1:5933024-5945265[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00055 0.049 15.0 0.6 3 23 245 265 244 265 0.93 2 13 1.4 1.3e+02 4.2 2.1 5 23 277 296 273 296 0.88 3 13 0.9 82 4.8 0.4 1 23 300 323 300 323 0.91 4 13 0.0027 0.24 12.8 4.8 1 23 396 418 396 418 0.99 5 13 0.065 5.9 8.4 3.9 2 23 427 449 426 449 0.96 6 13 0.21 19 6.9 2.9 1 23 453 475 453 475 0.98 7 13 3.7e-06 0.00033 21.8 1.7 1 23 480 503 480 503 0.98 8 13 0.15 14 7.3 2.2 1 23 507 530 507 530 0.85 9 13 1.1 97 4.6 0.0 2 19 549 566 548 569 0.90 10 13 0.011 0.95 10.9 0.7 3 23 612 633 610 633 0.96 11 13 1.2e-06 0.00011 23.3 1.5 1 23 642 664 642 664 0.98 12 13 0.0004 0.036 15.4 0.7 1 23 670 692 670 692 0.96 13 13 5.2e-06 0.00047 21.3 2.6 1 23 698 721 698 721 0.98
Sequence Information
- Coding Sequence
- atgtATGATCTCAAAGTGTGCACAGTGTGCTTACAAAAAgatgttaaaatttataacttaGATAGAGATCAATTGAGAAAAGACTACAATTTAATATCAGGCCTTaagACTCGTAGCGGAAATGGTTTACCTGAATACTTATGTTTTCAGTGTGTCGCTTTTATAAAAAGTTGCAAAAAATTTCGTGAGAAATGCCAAAGGGCTTACTTTGCTTTACAGGAGATATTACACAGAAATAAAGAGATAAGCAAATCgataattgataatttagaCTGTAGAGCATTAAAAATTGGCCCAAGCCTTTCCTATCTTGATACAAACATTGTTAAAACGAAATTTGATAATGTAAAGTTTAAATGGATGAAAACAATTCGCATGAATGTAGAACCTCAAGAAAATATACGAGTTATTCAATATGGAAGTTCTGATGCTAATTCCTTTGAAGCAGCAATAGAAAGAGCTGGACTTGGAACTGTAAAAGATGAAACTGAAAACATAGTTAATCAGAATGATTATGAACAGATAAATGTAGATACTAACACGGAAAATTTGTATGACAATGAATTTGATGTCAATTCAGATAAAGATTTCGATAATGACGTAGATAAAGGTGAAGCAGACGTAGATGGAAATAAGTTGGATGAGGAATACGCATCTATGGTCCCAATAACATTGAAAGAAGCTCACGCAGTTTCAGatgtttgtaaattattttcaagTGGAAAGAACCAGTGTATAGTTTGTGGTAAATCGTACAACAGTTTGCAAAGGCTGAAAGTACATATGAGAATGCACGAAAAGCATGTCAGTGGAACACACTTGTGTATTTTATgcaactattattataaaactgagTTTCTATTAAAGACACATATGACTGATAAGcatatgtacaaatatttatgcAGAAAATGTCCAGAGGTAACTTACGATAGAACATCAGCTAAACAACATTATATCTGGACACATCTTCAAAAGGGCAGTAAAAagaatgacaattggtataaaAACAGGCCCAAATGGTTGAGTAGCAAGGGGCTTAAAAAGGAGAAACTATATGTGCGCCCAGTCAAAAAACTAGCGAAACTCCCAAAAGATTTCCCTGCATACTCCCCAATAAGTCAAGAGGAACAATATGCTTTGGTTCAGGAGAGGAAGAACACGAAGAACTATATGGACTCCCCTTTCAAGTGTCAACATTGCTTTAAAGGGTTCAGGGAAGCGATGACGTTCGCTAAACACCTTAAGAAACATGATCCTAATGTTTCCGGTAGCCTACAATGTGACATGTGCAAGATTTATTGTACAAATTCAAGAAAGATGTACAAACATATGAACATGTCACATCTCTTCAAATATTCCTGCCAGCTGTGCAGTTATGTCTGTTTTAATAGGGGTCAAGCGAAAATGCATTACAGATGGCACAAAAATGTGACGTATTCTTGTCCGCACTGTGGGAAAGTTTTTACTAAAGCATCAACCAGATTGACACACATCCGAATAAAGCATCCGTCGATGTTTATCTGCAATTTGTGCGGACACAGCTTTGTTAGTGCGAACGGACTATATTGTCACAAGAAACTGGCGCACAGTGTGCAGGAGGTTGAAAGCAGTACAGGCGAAGTGGACACCTCACACCGGCTGTATTGCAGGGAGTGTGGGATACAGTTCGTGGACGATGCCGCTTTCGCTACGCACTTCGGTTCTTCAAACAAACACGCGGAAACCAACTTATCAATAAAACCAATAAGGTCTAAAAGCGAGCGTCCCCGAGGCAGGCCGCGGCGGGACAATAGCGAAATCGTCAACACGGGCGTCGTGACTGCTTCCAACTGTGAGATTTGTAAAAAGTATTTCCCTAACGACAAGCAAGCGAGGCGGCACTACGAAACGGAGCACCCCGGCACCGAGTTCCTGAAGCGGTACATGTGCGATATTTGCGGACATACCACTAAGCAATACGCTAACCTGACCGTCCACATGCGCACGCACACGCTCGAGAAGCCGTACGCGTGCCCGCACTGCGAGCGCCGGTTCAGCATGCCGAGCAACCGGGACCGCCACCTTGTTGTGCACACAGGTGAAAAGAGATATCAATGCCAACACTGCAACCGTCGGTTCACACAAAGCAGTGCGGTCAAATTGCACATACAGACAGTACATATGAAGATCCCTTACGCTCCCTGGGACAAGAAGAACCGCAAGCGACGTCGGGAGATGGAGGTAGCACCCCTCCCACCTCCTGTTCCCACTCACAAGCTCGTGCTTGACACTGCGAACTACTTAAGTGCCTACATTACTTATAACGAGTGA
- Protein Sequence
- MYDLKVCTVCLQKDVKIYNLDRDQLRKDYNLISGLKTRSGNGLPEYLCFQCVAFIKSCKKFREKCQRAYFALQEILHRNKEISKSIIDNLDCRALKIGPSLSYLDTNIVKTKFDNVKFKWMKTIRMNVEPQENIRVIQYGSSDANSFEAAIERAGLGTVKDETENIVNQNDYEQINVDTNTENLYDNEFDVNSDKDFDNDVDKGEADVDGNKLDEEYASMVPITLKEAHAVSDVCKLFSSGKNQCIVCGKSYNSLQRLKVHMRMHEKHVSGTHLCILCNYYYKTEFLLKTHMTDKHMYKYLCRKCPEVTYDRTSAKQHYIWTHLQKGSKKNDNWYKNRPKWLSSKGLKKEKLYVRPVKKLAKLPKDFPAYSPISQEEQYALVQERKNTKNYMDSPFKCQHCFKGFREAMTFAKHLKKHDPNVSGSLQCDMCKIYCTNSRKMYKHMNMSHLFKYSCQLCSYVCFNRGQAKMHYRWHKNVTYSCPHCGKVFTKASTRLTHIRIKHPSMFICNLCGHSFVSANGLYCHKKLAHSVQEVESSTGEVDTSHRLYCRECGIQFVDDAAFATHFGSSNKHAETNLSIKPIRSKSERPRGRPRRDNSEIVNTGVVTASNCEICKKYFPNDKQARRHYETEHPGTEFLKRYMCDICGHTTKQYANLTVHMRTHTLEKPYACPHCERRFSMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHMKIPYAPWDKKNRKRRREMEVAPLPPPVPTHKLVLDTANYLSAYITYNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01018878;
- 90% Identity
- iTF_01018878;
- 80% Identity
- -