Mdei024478.3


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Morpho deidamia
Gene Symbol
-
Assembly
GCA_029101505.1
Location
JAPJRL010000026.1:9016913-9034371[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 9.4e-05 0.0076 17.3 0.1 3 23 128 148 127 148 0.97
2 18 3e-06 0.00024 22.0 1.2 1 23 154 176 154 176 0.99
3 18 5.3e-06 0.00043 21.2 2.7 1 23 182 204 182 204 0.99
4 18 3.5e-06 0.00028 21.8 2.6 1 23 219 241 219 241 0.98
5 18 4.9e-05 0.0039 18.2 3.1 1 23 256 278 256 278 0.98
6 18 3.4e-07 2.7e-05 25.0 1.5 1 23 306 328 306 328 0.99
7 18 0.00015 0.012 16.7 2.8 1 23 334 356 334 356 0.98
8 18 4.2e-05 0.0034 18.4 0.1 1 23 363 385 363 385 0.99
9 18 1.1e-05 0.00086 20.3 2.1 1 23 391 413 391 413 0.99
10 18 0.034 2.8 9.3 1.8 1 23 420 442 420 442 0.98
11 18 5.7e-07 4.6e-05 24.3 2.3 1 23 448 470 448 470 0.99
12 18 0.04 3.2 9.1 1.8 1 23 477 499 477 499 0.98
13 18 2.3e-06 0.00019 22.4 1.5 1 23 505 527 505 527 0.99
14 18 0.00044 0.036 15.2 0.7 1 23 534 556 534 556 0.99
15 18 2.6e-06 0.00021 22.2 1.9 1 23 562 584 562 584 0.98
16 18 0.0019 0.15 13.2 0.3 1 20 590 609 590 612 0.93
17 18 3.5e-05 0.0028 18.7 1.3 2 23 619 640 618 640 0.96
18 18 3.3e-06 0.00027 21.9 1.4 1 23 646 669 646 669 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAGGCTGAGCCTATGAGCTTTTACACACATCCCCATATAAATACCGGCCCCCCGACGATAATTCGTTCAGATTCAAATCAAGGCATCATTAGCATGAACCCACTTCACCAGCAAGAGGATTCGAAGGACAGTCTCATAGTACAACACCAAGTACACCAACAGGAGTTGCTGGATCAGCACCAACAGGAATTGCAACATGACGATGAAGTAgataatCTAAGCTTTAAAGGCATGGACGATGAAGGTGTTGAATTGGATATGGACGGGCGACAATGTTCTCAGGGTATGGTCGATATGGGATCGATTCAAACAAAAATGGAAGTTGCGAACGGACAAGGGATACCACGATCCAAGCCACAGGCCTGTAAGgtTTGTGGTAAAGTTCTATCATCGGCCTCGTCGTACTATGTACATATGAAGCTTCATTCTGGAAATAAACCCTTCCAATGCACTGTTTGCGAGGCAGCGTTCTGCCGCAAACCGTACCTAGAGGTACATATGCGCACGCACACCGGCGAGCGGCCCTTCCAGTGCGACTTGTGTCTCAAACGCTTCACCCAGAAGTCTAGCCTCAATACGCACAAACGCGTCCACACCGATGAGCACATGCGCGCGTTGATGGTGAAGGAGCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGCTTCACGCAGAGCTCCAGCCTGAACAGACACAAGAAAATTCACACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACACGGAAAAATACACACCGGTAGGCTATTTGCCCTAAAATCCTTTAGTAGACAATCAAAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGTGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAGCGTATACACACCGGCGAGCGGCCCTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGTGCAAGGGCGACCTTACACGTGCGGGCAATGCCCCGCGGCGTTCGCCCGGCGCCCGTACCTGGACATTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAACGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATATCTGGAGATACACACGCGAACGCACACCGGCGAGCGCCCGTATCAATGTGACATCTGTCTCAAGCGGTTCACACAGAAGTCCAGTCTCAACATTCACAAACGGACGCACTCAGTGCAGGGCCGGCCCTTCCAGTGCTTGCAGTGCCCGGCCGCGTTCACCTGCAAGCAGTACCTCGAGATCCACAACCGCACGCACACCGGCGAGCGGCCCTATCAGTGTGATGTCTGTCTCAAAAGATTCGCGCAAAAATCCACTCTAAACATACACAAAAGAACGCACACGGTCCAAGGGCGGCCGTATCAGTGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAAATACACATGCGCACACATACAGGCGAGCGGCCCTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCTACACTCAACATTCACAAGCGAATTCATACCGGAGAACGTCCATACGCATGTGATATTTGCCAAAAACGGTTTGCAGTGAAGAGTTACGTAACAGCGCACAGGTGGTCACACGTGGCGGACAAGCCGTTGAACTGCGAGCGGTGCTCCATGACGTTCACGTCCAAGTCGCAGTTCGCACTGCACATCCGCACGCACTCCAGCGGGCCGTGCTACGAGTGCAGCGTGTGCGGGCGGACGTTCGTGCGCGACAGCTACCTCATACGGCACCACAACAGGGTGCATCGTGAGAACCATAGCAACGTGTCCGCGAACAGTATCGGCACCATTACGAGCGTCGGCAACCCAAACAACTCAAACAATGGGAACTACGATTCACCCGGCGTATGCGATCTTAGGTGA
Protein Sequence
MFEQQIKAEPMSFYTHPHINTGPPTIIRSDSNQGIISMNPLHQQEDSKDSLIVQHQVHQQELLDQHQQELQHDDEVDNLSFKGMDDEGVELDMDGRQCSQGMVDMGSIQTKMEVANGQGIPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCEAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKERPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTGRLFALKSFSRQSKEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPYTCGQCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCERCSMTFTSKSQFALHIRTHSSGPCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTITSVGNPNNSNNGNYDSPGVCDLR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
iTF_01017903;
80% Identity
-