Mlae032424.1
Basic Information
- Insect
- Monopis laevigella
- Gene Symbol
- Gzf1
- Assembly
- GCA_947458855.1
- Location
- OX375846.1:8392575-8400892[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.0065 1.3e+02 3.9 0.1 14 45 207 239 205 243 0.77 2 3 0.0077 1.5e+02 3.7 0.3 18 46 297 325 293 330 0.88 3 3 4.1e-08 0.00081 20.6 0.1 11 48 348 385 340 387 0.89
Sequence Information
- Coding Sequence
- ATGTCTAAGAAATCGCATAAAGTTCCTTACAAAGAGCTATTGAAAAACTGCAAAAATGTGCATGGAGCTAATTTACTCTTAGCAACATTACTTGTCCGTAAGTTGAGAAACAAGCGCAAAGTCCAGGATAATTCTGAAGTAATGTACTGCAGGACTTGCCTGAGGACAGACAACTTAGAGCCTATATTTGTAGAAGAACTCGACTGTATTAAATCTGAAGATCTATTATTTGCAACTGGACTGGAGATTCAAAAAGATGATGGCATTTCTCAATTCATATGTACTGTGTGTATAAAATACATAAAAGACCATCTTGCCTTCCGAGAAGACTGTAAACGTTCCCAGGAATACCTTCTAAAATACACAAAAACAAAACAAAACCAATTTAATCAAAAACCTGTACAAGAAGTGAACAATGTTCAAGTTAATCAATTACCTGTACAAGAAGTGAACAATGTTCAAGTCGATATATCAGAAATTAAATCTGAAGAAGATTGGATGGATACCTATAAATACAATGAAAATAATGTAAAAGATATGGAAATTGCAGAAAATAATGATAATATATATGATCAAGGCATAGAGCAATATGAAGAAAATGATAATAAAATTAATGTAAAACCGAAAGTTAAGAAAAAGAAAAACTGCCCACCTTATAAATGCAATATTTGTAAAAAACATATGGCAAACTCCTGTTCTTTAAAGTCACATTTGAATTGGCATACTGGACATACTTCTTATATTTGTGAGACTTGTGGAAAAAGGTGTCTAAATCGTACAGCATTTTTGCAGCATATGAAAGGAAAACATGGATTGCAACGGACTGATAAATGCAGTTACTGTGACTATTTGGCACTTAATAAGGAACAACTTAAGATACACGAGAGACGTCACACTGGGGAGCGACCATACATCTGTGCACATTGTGGAGCGGGCTTCCATCGGAGAGCAAACCTCATCCAGCATCTGCCAATACACTTGACTATAAAAAATATACAGTGTGATCTCTGTCCATCAACATTCAAATCGGCAAAGTTTCTCGCGACACACAAGAGCCGCTCTCACAGTAACAAGAACTACTCCTATATGTGTCATATATGTAACTCTGTCTATAAGAAGTCGTTCAATGTCAGGAAACATCTCACAAAGGTGCATTCCATACCTCGTGAAGAGCAAGGCGATGTCGTTAAGTTTAGAGTAAGATGTTTTGGGGATGCCGTGTAA
- Protein Sequence
- MSKKSHKVPYKELLKNCKNVHGANLLLATLLVRKLRNKRKVQDNSEVMYCRTCLRTDNLEPIFVEELDCIKSEDLLFATGLEIQKDDGISQFICTVCIKYIKDHLAFREDCKRSQEYLLKYTKTKQNQFNQKPVQEVNNVQVNQLPVQEVNNVQVDISEIKSEEDWMDTYKYNENNVKDMEIAENNDNIYDQGIEQYEENDNKINVKPKVKKKKNCPPYKCNICKKHMANSCSLKSHLNWHTGHTSYICETCGKRCLNRTAFLQHMKGKHGLQRTDKCSYCDYLALNKEQLKIHERRHTGERPYICAHCGAGFHRRANLIQHLPIHLTIKNIQCDLCPSTFKSAKFLATHKSRSHSNKNYSYMCHICNSVYKKSFNVRKHLTKVHSIPREEQGDVVKFRVRCFGDAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01017344;
- 90% Identity
- iTF_01017344;
- 80% Identity
- iTF_01017344;