Basic Information

Insect: Monopis laevigella
Gene Symbol: Unr
Assembly: GCA_947458855.1
Location: OX375839.1:25602988-25631874[+]

Transcription Factor Domain

TF Family: CSD
Domain: CSD domain
PFAM: PF00313
TF Group: Beta-Scaffold Factors
Description: In molecular biology, the cold-shock domain (CSD) is a protein domain of about 70 amino acids which has been found in prokaryotic and eukaryotic DNA-binding proteins. When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees Celsius, a 4–5 hour lag phase occurs, after which growth is resumed at a reduced rate.During the lag phase, the expression of around 13 proteins, which contain cold shock domains is increased 2–10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.6e-16 3.5e-12 47.1 0.0 2 65 108 170 107 171 0.95

2 9 0.00026 2.6 9.1 0.0 16 58 201 243 189 251 0.78

3 9 5.4e-18 5.3e-14 52.9 0.4 2 65 261 320 260 321 0.95

4 9 0.084 8.2e+02 1.1 0.0 40 55 385 402 367 412 0.77

5 9 1.1e-09 1.1e-05 26.3 0.0 2 62 426 488 425 492 0.87

6 9 0.002 20 6.2 0.1 4 64 511 571 508 573 0.78

7 9 6.9e-13 6.8e-09 36.6 0.0 2 53 579 627 578 638 0.91

8 9 1.5 1.5e+04 -3.0 0.0 41 53 704 716 698 719 0.77

9 9 1.2e-13 1.2e-09 39.0 0.0 2 65 731 794 730 795 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.6e-16	3.5e-12	47.1	0.0	2	65	108	170	107	171	0.95
2	9	0.00026	2.6	9.1	0.0	16	58	201	243	189	251	0.78
3	9	5.4e-18	5.3e-14	52.9	0.4	2	65	261	320	260	321	0.95
4	9	0.084	8.2e+02	1.1	0.0	40	55	385	402	367	412	0.77
5	9	1.1e-09	1.1e-05	26.3	0.0	2	62	426	488	425	492	0.87
6	9	0.002	20	6.2	0.1	4	64	511	571	508	573	0.78
7	9	6.9e-13	6.8e-09	36.6	0.0	2	53	579	627	578	638	0.91
8	9	1.5	1.5e+04	-3.0	0.0	41	53	704	716	698	719	0.77
9	9	1.2e-13	1.2e-09	39.0	0.0	2	65	731	794	730	795	0.91

Sequence Information

Coding Sequence: ATGAGTTCAAACTCTCCTTGGAAATTATTCCAGTCATCATCCACTTTGCAAGATATCTTGGAAACCAGTACAATGCAGTCAAAATCATCTTATTCTAATGGAAGTTACAGCACTGACTTTCCCAGCTCTCCTCGAAGCACCTATAGTAACATTGGAAACATGAGTAGCAGCAGTAACCGAAATCATCAGGGATCAAACAACTTCACCGCAAATGAGGGTGGCAGCATTGGAGACAGCAATGCATTTTCATCTTCTACAAATTCGAATCAATCTAATAATCAGCAGCACTTCGAATCCCATGGACACCCTCCCATTCGTGAAACGGGGATAATTGAAAAATTGCTTCATTCCTATGGATTCATCCAATGCTGTGAACGCCAAGCTCGCCTGTTTTTTCACTTCAGCCAGTTCAGTGGAAACATTGAACATCTCAAGATAGGCGATCCTGTCGAATTTGAAATGACTTACGATCGTCGCACTGGCAAACCTATAGCATCTACCGTAACCAAAATTGCTCCGGAAGTTGTTATGAGTGAAGCTAGAGTGACTGGTACTGTCACCACGGAAGTAAAGGGAGAAGGCTCTGGGGACAACACTGGTCGTATTTCGTATGAAAATCGTGGAGAATGTTTCTTTTTGCCCTACACTAAAGACGATGTTGAGGGTAATGTGACACTGAGACCTGGAGACGCAGTTAGCTTTCAAATTGCAACAAACCAAAGAGGAACGCTGGGCGCTTGCCACGTTCGTTTCGAGAATCCTGCGCACCCAGTGAAGTATCACGGGGTCGTGTGCTCGCTAAAGGAATCCTTCGGCTTTATAGAGAGAGCGGACGTGGTTAAGGAAATATTTTTCCATTTCTCCGAATCCAAGATAAAGGAAGATCTAACCTTAGGCGATGACGTTGAATTTATTATCCAGAACAGGAACGGTAAAGAAGTAGCCTGCAACATAACAAAACTTCCTAGTGGGGCAGTAGTATTTGAAGATGTCAATCCGGACATCATGAAAGGCCAAGTATTAAAACCTCTTGAGCGAGGAAACGCAGCTCGAATGCAAAATGATCCTTTACCTGGAAGAATTAGGTACAGAGCAGCTGATCACTCGGAGGTGGAAGTGCCTTTCGGTGATAAAGATCAAGCAGGAGAATTTACTTTACGCCATGGAGATTGGGTCCAGTTTACAGTGGCCACAGATAGACGTGACCAACTTAAGAGGGCTACGACAATCTCTCTACTTGACGAGTCGTTCAATGTTTCTGGAGAACGAAGGGAACAGGGCGTTGTAAGTTCTCTTATGGACGGATTTGGTTACATAAATTGTGCTGAGAAAGACCAAAGGCTTGTTTTCCGTTTTTCTGAGGTGTTGCGTATGGGACACGAATTGACTGTTGGCGATGAGGTGGAATATACAGTAGACCAAGTGACATCATTTTCTAACTCCACGAGGCCGTCTGCTATTCGTATAAAGCATTTATCCCCCGGGTCTGTGCGTTTTGAAACACTGCTCGAGAGGGGAATCCGCGGCGTTGTAGTCAAAGACCTCCAGGATTCAGGCAATGGAGGTCTTATCGAGCGTAATGGGACCAAATCATCATACGCATTCTTTTCGTCAAGTGTTGAAACGAAACTGCGTCCCCGTATTGGGGATAAAGTTACTTTTGATGTGTATCAGGTTAAGCGTAATAAAGAGCTGGTAGCCATGTCTGTCCAAATCCAACACCGTGGCATTAATCAAGGATTCATAGCTGCATTGAAGGACGGCTTTGGATTTATTGAAACTGTAGCCCATAACAAAGAAGTCTTCTTTCATTACAGTAACTACGAAGGAAATCCCGACAAGTTAGCCCTGGGTATGGAAGTGGAGTATCTTTTGGGTCGCAGCGGCGGCTCTAGCAGCGGTAGTTGTGCGAGCGCCGAGTTGGTCCGCCAGCTCTCTCCCGGGTCCATTAGGCTGCCCAAAGTATCTGAATCAGTGCTCAATGGTACTGTGTGCAGGACGCTTCGTTCTCTTAATCCTGGTCAACCAGAGTATACAGGACAAATAAAAGTTGACGATGACAATTATTACGAATTTGGCATTATGGGCATTTCTAACAAGTTGGATATTTTCCAAATTGGAGATCCGGTCTCATTTCAAGTTGATAACGAGGGCATGGCGTCTAACATTATGCAAATGAAGAAGAAACGCCGCGGAATCGTCGATTCTATTAATGGTGGTTTTGGATTTTTGAATGTCCATCTGGAGGAGTGTAAGAGGCTATTTTTCCACATGTCGGAGGTCCGATCTAACCGCAGCGACTTGCAGCAAGGTGATTGTGTGGAGTTTGTACTGCTGCAGAATCCTAGGAATGGAAAACTTTCTGCTTGCAATGTCGTTAAAGTACCTAAGAAACGACCGGACCACTTGATCTCACGTGTCCGCAACCTTAACCTGGACGACAATACGCCACGTGTCATCACGCTGCGCATCCCTAGAGGACCCGACGGCACTCGGGGCTTCCGACCTCGCCGCCCGATCAAAGGTATTTTTTTAACGGCCTCTACGCATCAGGAATGGTATCATGACCGTATGCAAACGATACGAGAAATCACGCGCGCCTCCTACGAATACGAATCTGGAGCTTGGCTTAAAGCAATACCTTCACCTCATCTAGACACTTTACTTGATCCGGAATCTACTCGAATTGCCGTGTCGCTCCGACTCGGGGCACCCATATGTCGTTAA
Protein Sequence: MSSNSPWKLFQSSSTLQDILETSTMQSKSSYSNGSYSTDFPSSPRSTYSNIGNMSSSSNRNHQGSNNFTANEGGSIGDSNAFSSSTNSNQSNNQQHFESHGHPPIRETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNIEHLKIGDPVEFEMTYDRRTGKPIASTVTKIAPEVVMSEARVTGTVTTEVKGEGSGDNTGRISYENRGECFFLPYTKDDVEGNVTLRPGDAVSFQIATNQRGTLGACHVRFENPAHPVKYHGVVCSLKESFGFIERADVVKEIFFHFSESKIKEDLTLGDDVEFIIQNRNGKEVACNITKLPSGAVVFEDVNPDIMKGQVLKPLERGNAARMQNDPLPGRIRYRAADHSEVEVPFGDKDQAGEFTLRHGDWVQFTVATDRRDQLKRATTISLLDESFNVSGERREQGVVSSLMDGFGYINCAEKDQRLVFRFSEVLRMGHELTVGDEVEYTVDQVTSFSNSTRPSAIRIKHLSPGSVRFETLLERGIRGVVVKDLQDSGNGGLIERNGTKSSYAFFSSSVETKLRPRIGDKVTFDVYQVKRNKELVAMSVQIQHRGINQGFIAALKDGFGFIETVAHNKEVFFHYSNYEGNPDKLALGMEVEYLLGRSGGSSSGSCASAELVRQLSPGSIRLPKVSESVLNGTVCRTLRSLNPGQPEYTGQIKVDDDNYYEFGIMGISNKLDIFQIGDPVSFQVDNEGMASNIMQMKKKRRGIVDSINGGFGFLNVHLEECKRLFFHMSEVRSNRSDLQQGDCVEFVLLQNPRNGKLSACNVVKVPKKRPDHLISRVRNLNLDDNTPRVITLRIPRGPDGTRGFRPRRPIKGIFLTASTHQEWYHDRMQTIREITRASYEYESGAWLKAIPSPHLDTLLDPESTRIAVSLRLGAPICR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -