Mpha029300.1
Basic Information
- Insect
- Monomorium pharaonis
- Gene Symbol
- -
- Assembly
- GCA_013373865.1
- Location
- JABXFI010000014.1:5697911-5702548[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.017 2.8 9.4 3.1 1 23 401 423 401 423 0.97 2 19 0.014 2.3 9.6 0.5 2 23 458 479 457 479 0.96 3 19 0.00021 0.034 15.4 1.7 1 23 545 567 545 567 0.96 4 19 0.001 0.16 13.2 0.8 2 23 571 592 570 592 0.96 5 19 7.3e-06 0.0012 20.0 0.7 2 23 640 662 639 662 0.96 6 19 0.013 2.2 9.7 6.3 1 23 668 690 668 690 0.97 7 19 0.00038 0.061 14.6 0.7 1 21 696 716 696 720 0.92 8 19 4.9e-05 0.0079 17.4 1.2 1 23 796 818 796 818 0.97 9 19 0.00018 0.028 15.6 5.0 1 23 875 897 875 897 0.97 10 19 0.00043 0.069 14.4 0.7 1 20 902 921 902 923 0.93 11 19 0.00063 0.1 13.9 0.4 2 23 934 955 934 955 0.97 12 19 2.5e-05 0.0041 18.3 0.6 2 23 994 1015 993 1015 0.97 13 19 2.3e-05 0.0037 18.4 1.6 1 23 1020 1042 1020 1042 0.95 14 19 0.00099 0.16 13.2 1.7 1 20 1048 1067 1048 1070 0.93 15 19 4.1e-06 0.00066 20.8 0.4 1 23 1086 1108 1086 1108 0.95 16 19 3.3e-07 5.4e-05 24.2 0.6 1 23 1114 1136 1114 1136 0.99 17 19 3.6e-05 0.0059 17.8 0.2 1 23 1142 1164 1142 1164 0.97 18 19 0.021 3.5 9.1 6.9 1 23 1170 1192 1170 1192 0.96 19 19 0.012 2 9.8 0.7 1 20 1198 1217 1198 1219 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGCAGAGATAAATACGTTGGATCCGCCGCAAGTCGAGGACGCGGCCGCTGTGAAGATATGCCGCGTCTGTCTGCTCGACAACCTGATGATGCGCGACCTTTTCCTGGAGAGCGAAGTTACGTCCCTGTCGACGAAGGCGATGAGCTTTGCCAATGTTAAGATGTTACCAGGTGATGGTCTACCAGCACAAGTATGCTGTGTATGTGCCGACAAACTGGAGTCGGCATATGAGTTTAAGTTACAAGTGGAACAAGCTGACAGTGTTCTTCGAGAAAGGCTCATTGGAGGGATAATAAAGGAGGAGGAGATATTTCTCAATGAAGTTGAAATACATTTAGACACTGAAAGGAATGACAATATTGAGGAAATCAGTATCAATACTGATTATGAATCCAATGCCACGCTGCCAGTGGAGTCGGAAGCTAACaagaattttctaaaaaatcagTTAATGATTTTGCAAGCTGAAAAATTGGAAGAGACAGAGGGAGGAATGCAACAAAGTAAGAAATattCAGAACTACCAGATAACTCGCAAGAAATCACACAACAGAACATTGCAGAAGAATTGCAGCAAGAATTAGCTGATGCAGAAGATAATGACATATTAGATGCTGTTGATGAATCGAGGGACGAGGAACCTTCCAGCGACGAGAATGTCATTCGAAGCTGCGCAGATATGATTCCAGCAGAGGAACACGATTATATTATGCAGCAGCAGTGTATATTGCCTCCTGAACGACTCCCTTTACGAGAAGAGATACAAGAGACTGTACCAGAACTTGGACAAGACAAAAACATAGTAGAACATCAAGATACACCATTCGAACAAAATCAAGAGATTCTGACTGAGCAAAACCAAGAAATTCAAATTCAGCAAATACATGAGTCTCAAGCTGACCTTCACAATGAAGAGATTCAAGCAGAACTGAAACAAGAGGCTCAAGCTAAGGAGGAGAATCAAGCTAAGCAAAATCAAAACAATAAAGAAGAATTACTCAGGGAGGAAGCCAAAAATGTATCAGTAGTGGAACAACAGGAATCGTCCCAGAGTGAAACTAGAAGAAGTAAACGTAGATTAGCTCGTCGGACATTCGCCGAACGAGATTCCGACGAGgagaattattttgagaatctGAATCTCAGTTCACGGTTGAAAAAAGCACAGGCGGATAAGGCagagaagatattttttatgtgttactTGTGCGACAAGCAGTTCCTTTCAAAGAGCGTTTTGAAAGAGCATATGCATTCCCATGAAGAGGTGAGGAAAACGCTGTCTCTGAAGAAAACGCCGGAGAAACCGCAAAAGGTGCAGACTTCCGTCGTGAAGACGCCGCCATCTGGGAAAAAAGCTAACAAGTGCCCTTATTGTGGTAAAGAGTATCTGTACATAATTTCGTTTACTAAACACATTAAGCAACACGAGCGGGAACGAGAGGAAGCGAAGGAAGAATCGATGCCGCTCGAGATATCGTTCCACGAGGATGAAAACAGTCTAGACATCGAGAGCAATAAATCCGATGGTGAATGCAAGAAGCGAAAAAGAGGAAACATTGACGCAGACGACGCCATGAGCGACAGTGATGATAAGAGAAGAAAGCGTAGTCATGTCGAGGAGTTTGCATGCGACAAATGTTCAGAAAAATTTGATACGAAGCGAAGCTTGCAAAAGCACTCGATCACgcatgttaatttaaaatgtagtgTGTGCAACGAGGAATATGATACTCTGGAGCAACTGAAAAATCATCGTACGAAGCACGTGATCGAGGGCGTGCTCAGCGAACAAGATTTGGAAgaagatatgaaaaaaataacggaAATTAAGACTATTGAGAATGACATTGATGACAACAAGAATATCGAGAGTGAAGGGAACACCAGTAAAAACACGAAAGAACTGAAGTGTCCTACGTGTTCGATGACGTTCTCGCGCAAGAAAGCGCTGTCGAAACACATAGAGACGGCACACTCTAGTGGCCGCTTTTACGAATGCAAGATATGTTGCCAACATTTCACGCGGAAGGAACTTCTGCGTAGGCACACCGAGCAGCATGCGCGAGTGAAGACTTATAAATGTACCCAGTGCAACAAGACCTTCGGTAACGAGCTCACTCTTAGAAATCATTTGATCGCTACGAATCACAAGACATTTATGCATGGGCAGGAATACGATCCGAATAAACGTATAAAGCGCGTCGCGGCAAGAGCAGCACAAAAGATCATCGACAAGATCAAGACGGAGGACGGTCTCGAGGATTACGACGACGATAACGATGATAATACTGATTACGACGCCAAGTTGGACGGGCATTATCGCCGTAAGCGATCGCTTGATGCTACACCAAAGAAGTACAATTATAAGAAAGAATTTGAGTGCGCATCTTGTAACAAGAGGTACAGCTCGAAGCAAGCATTAACGAAGCACATGGAGCAGCATGTGAAGGAGGAGAAAGTGGAGAAGGCAGCGGAGAAGGCGGCAGAGAAGCTGAAGAAGGCCAATTTGGCCGAAAAGAAGGAGGAACAGAAAATGAGCAACGTGGGTGATaacgatgatgacgatgacgactcCGACTTTGAAAGCGGCCTCGAATGGCCAATGGACAGCCACGAGTGCACCACGTGCAAGAAGCGATACAGTACGAAGAAGTCGCTGCTGCGCCATCAGTTGTTGCACGAGGAACCGAACTTCGCGTGCGATATCTGCAATCTCAAATTCTACCGCAAGGACAAGCTGAAGGCGCACTACGACAAGTGCTCAGAGAAGAATCCCGATCAAGTAAGAAAGTGCAACATTTGCGGCGACAGTTTCGAAAATAACGAGCTCTTGCGCGAGCATAGGGCCAAACACGTCACCGAGGGTATCTTAACAGAGGAGGATCTGAGGGACATCGAGCCGAAATCCGAAGAAAAGAAACCAGGCGAGAAAATCGGCCGCAAAAGGAGGACTGATATCGTAGGGCTCGAGTGTACCGAGTGCAACAAACAATACACCTCCAGGAAGGGCTTGCTGCGACATATACAGGTTCACGAGGGTAAGAAGTACCTGTGCGACATATGCCCGAAGAAATTCTATCGCCGAGAGCATTTGAAAATCCACGTGGCTAAGCATAACATGATCAAGCCGTACAAGTGCACTCGCTGCAGCAAACGCTTCATTAAGGAAGAGCAGCTCAACAATCACCTGCCTAAGCATGATCGCACTTTCAAAAAGAGCAAGGAGACCGATAGCTCGAAGAGATTCCTTTGTGAGATCTGCAGCAAGAGCTTTACGCAATCGACAACGCTGATAGCGCATCTGCGCGCCCATAACGGCATCAAACCGTACGTTTGCGAGGTGTGCTCCAGACCGTTCACCACTAATGCCTACTTGAAGATGCATATGCGGACGCATACTCAGGAGCGTCCATACATCTGTCAGTACTGTTCACGAGCATTCGCGCGTGCCGACACTTTAGCGAATCATCTAACGTCACACACTGGTGAAGCCAAGTATCACTGCAAGTGCTGTCCGAAGAATTTCCGACGATTGAAATCGCTAAAAGAGCACATGTTCATTCATACTGGTCAAAGACCGTACGACTGTCCGACCTGCGATAGAAAGTTCAACAATAACGGCAGCCGCTACGCGCATAGCAAGCGCTGCAAACAGAATCTTTTACAGAATCAAAATCGAGCGCAACAGATGATGCAACAGAcacagcagcaacagcaacatcaacaacagcagcagcagcagccacAGCAAGTGCAGATACAAGTGCAACAGCCACAGCCACACCCGGTCAGGTTGCATCAAACCGCGATCGGCCAGGCACAAGTAGTCAAGGCGCAGAATATCAAGACTATCGCTATAACGAGACAAGCTGACCCTACCACGGTAGTAGGCTCGACGCAACAAGTTATGCAGCATCAGGAAATACTAATGCCTCTAATCCTACCGCTTACTGTCACTCTCGCCGACGTAGGCGAGGAGGTGATTCTACCCGAGGGTACAAAGATATTCACCACCTCCTAA
- Protein Sequence
- MDAAEINTLDPPQVEDAAAVKICRVCLLDNLMMRDLFLESEVTSLSTKAMSFANVKMLPGDGLPAQVCCVCADKLESAYEFKLQVEQADSVLRERLIGGIIKEEEIFLNEVEIHLDTERNDNIEEISINTDYESNATLPVESEANKNFLKNQLMILQAEKLEETEGGMQQSKKYSELPDNSQEITQQNIAEELQQELADAEDNDILDAVDESRDEEPSSDENVIRSCADMIPAEEHDYIMQQQCILPPERLPLREEIQETVPELGQDKNIVEHQDTPFEQNQEILTEQNQEIQIQQIHESQADLHNEEIQAELKQEAQAKEENQAKQNQNNKEELLREEAKNVSVVEQQESSQSETRRSKRRLARRTFAERDSDEENYFENLNLSSRLKKAQADKAEKIFFMCYLCDKQFLSKSVLKEHMHSHEEVRKTLSLKKTPEKPQKVQTSVVKTPPSGKKANKCPYCGKEYLYIISFTKHIKQHEREREEAKEESMPLEISFHEDENSLDIESNKSDGECKKRKRGNIDADDAMSDSDDKRRKRSHVEEFACDKCSEKFDTKRSLQKHSITHVNLKCSVCNEEYDTLEQLKNHRTKHVIEGVLSEQDLEEDMKKITEIKTIENDIDDNKNIESEGNTSKNTKELKCPTCSMTFSRKKALSKHIETAHSSGRFYECKICCQHFTRKELLRRHTEQHARVKTYKCTQCNKTFGNELTLRNHLIATNHKTFMHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYDDDNDDNTDYDAKLDGHYRRKRSLDATPKKYNYKKEFECASCNKRYSSKQALTKHMEQHVKEEKVEKAAEKAAEKLKKANLAEKKEEQKMSNVGDNDDDDDDSDFESGLEWPMDSHECTTCKKRYSTKKSLLRHQLLHEEPNFACDICNLKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNELLREHRAKHVTEGILTEEDLRDIEPKSEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCSKRFIKEEQLNNHLPKHDRTFKKSKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYDCPTCDRKFNNNGSRYAHSKRCKQNLLQNQNRAQQMMQQTQQQQQHQQQQQQQPQQVQIQVQQPQPHPVRLHQTAIGQAQVVKAQNIKTIAITRQADPTTVVGSTQQVMQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00126152;
- 90% Identity
- -
- 80% Identity
- -