Malt042251.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073434.1:38152766-38158608[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00072 9.3 7.9 0.0 21 45 134 159 130 164 0.82 2 13 0.18 2.3e+03 0.3 0.1 26 43 171 188 162 194 0.78 3 13 0.02 2.5e+02 3.3 0.1 26 46 202 222 192 229 0.85 4 13 0.093 1.2e+03 1.2 0.1 26 43 233 250 226 257 0.82 5 13 0.0052 67 5.2 0.0 26 47 264 285 254 291 0.86 6 13 0.00047 6 8.5 0.0 26 46 295 315 287 321 0.86 7 13 0.0085 1.1e+02 4.5 0.0 26 46 326 346 316 351 0.84 8 13 0.088 1.1e+03 1.3 0.1 26 43 357 374 347 380 0.81 9 13 0.034 4.4e+02 2.6 0.1 19 44 380 406 375 415 0.80 10 13 0.24 3.2e+03 -0.2 0.0 26 45 419 438 410 448 0.77 11 13 0.012 1.5e+02 4.1 0.0 26 45 465 484 450 490 0.86 12 13 1.4 1.9e+04 -2.6 0.0 29 46 499 516 498 523 0.71 13 13 0.057 7.3e+02 1.9 0.0 26 47 527 548 517 555 0.80
Sequence Information
- Coding Sequence
- ATGAAGAGCGAAAATTTGAGTGTCGTCCAGGAGCCCGTTCTTTGCAGTCGATGCTTCGATTCTGTTTGTACTCACAGCAATTTCATAAAGACCTGCGTTAAAGTAGAAAAGATAAGCAATATATGTGGCACTGCTTCTAATGCTGGGTTTTGTGAGCTCTCAGTAGTCCCGAACATTAAAACCGAGATTCAAATTAAGGTTGAACCAAGCGCACAAGAAGATGATTTGAGTGGAACTGAGTCGATTGTAGTAAAATCtgaatatgaagaaatgctaacTAAAAACGAATGTATTGATATAAAACCAGAAGATGATATAACTGATTGTAAATTGGGACTCGGAGGTGATCAAATGCAAAAATCCAGTCTTAAGATCCACCAGTTAGGCCACAAAGAAGTTTCAGAAGTGCCAATATACTCATGTGACATGTGCGAATATGCAGCCAAGGACAAGCGCAACCTTAAGCGCCACTTGTTAGTTCATAAAGACACTTCAGAAGTGACAATGTACAAATGCGACATCTGCAACTATGCAGCCAAGCGGAAGTCCCAAGTTAAGCGCCACCAGGTCGCCCACAAAGATGCTTCAGAAGTGACAGTGTACAAATGCAACATCTGCGACTATGCAGCCAAGCAAAAAGACATCCTTAAGCGTCACCTGTTAGTTCACAAAGATGCTTCAGAAGTgacaatgtacaaatgtgacatCTGCGACTATGCAGCCAAGCGGAAGTCCCAACTTAAGCGCCACCAATTTGCCCACAAAGATGCTTCAGAAGTGACAATGTACAAATGCGGCATCTGCGACTATGCAGCCAAGCAAAAAGGCACCCTTAAGCGTCACCTGTTACTTCACAAAGATGCTTCAGAAGTTACAGTGTACAAATGCGACATCTGCAACTATGCAGCCAAGCAAAAAGACAACCTTAAGCGTCACCTGTTAGTTCACAAAAATGCTTCAGAAATGAAAGTGTACAAATGCGACATCTGCGACTATGCAGCAAAGCTAAAAGACAACCTTAAGCGTCACCTGTTACTTCACAAAGATACTTCAGAAGTGACGATGTACAAATGCGACATCTGCGACTATGCAGCCAAGCGGAAGTCCCAACTTAAGCGCCACCAATTTGCCCACAAAAGTACTTCAGAAGTGACAGTGTACAAATGCGACATCTGTGAATATACAGCCAAGCAGAAGTACCAACTTAAGCGCCACCAGTTTGTTCACAAAGATGCTTCAGAAGTGACAATGTACAAATGCAACATCTGCGACTATGCAGTCAAGCACAAAGGCACCCTTAAGAGTCACCTGTTAATTCACAAAGAAACTGCAAAAGACCATGTTCACACCCACCAGTTTATCCACAAAGATGCTTCAGAAGGGACAATGTACAAATGCGACATCTGTGACTATGCAGCCAAGCAAAAAGGCACCCTTAAGCGTCACCTGTTAGTTCATAAAGATGCTTCAGAAGTGACAGTGTACAAATACAACATCTGTGACTATGCAGCCAAGAAAAAAGGCACCCTTAAGCGTCACCTGTTAGTTCACAAAGATGCATCAGAAGTGACAGTGTACAAATGCAAAATCTGCGACTATGCAGCCAAGAAAAAAGGCACCCTTAAGCGTCACCTGTTAGTTCACAAAGATGCTTCAGAAGGGACAGTGTACAAATGCAACATCTGTGACTATGAAGCCAAGCAAAAAGGCACCCTTAAGGCATCACCTGTTAGTTCACAAAGATCCTTCAGAAGTGACAAAGTACAAATGCAACAAGTGACTACGAAGgcaaAGGTAAATAGAATTGTGGCAACTAGTCGTATTCCATGTTTGGTAACATGGGAGGAGGTCACCGTCATCCGAGGAGCAGTTTCGACCATTGCAGCAACCAACATCAATATATGGGTGGGCTCAGGGATACTGATAGCCGATCTGTCCCCATAG
- Protein Sequence
- MKSENLSVVQEPVLCSRCFDSVCTHSNFIKTCVKVEKISNICGTASNAGFCELSVVPNIKTEIQIKVEPSAQEDDLSGTESIVVKSEYEEMLTKNECIDIKPEDDITDCKLGLGGDQMQKSSLKIHQLGHKEVSEVPIYSCDMCEYAAKDKRNLKRHLLVHKDTSEVTMYKCDICNYAAKRKSQVKRHQVAHKDASEVTVYKCNICDYAAKQKDILKRHLLVHKDASEVTMYKCDICDYAAKRKSQLKRHQFAHKDASEVTMYKCGICDYAAKQKGTLKRHLLLHKDASEVTVYKCDICNYAAKQKDNLKRHLLVHKNASEMKVYKCDICDYAAKLKDNLKRHLLLHKDTSEVTMYKCDICDYAAKRKSQLKRHQFAHKSTSEVTVYKCDICEYTAKQKYQLKRHQFVHKDASEVTMYKCNICDYAVKHKGTLKSHLLIHKETAKDHVHTHQFIHKDASEGTMYKCDICDYAAKQKGTLKRHLLVHKDASEVTVYKYNICDYAAKKKGTLKRHLLVHKDASEVTVYKCKICDYAAKKKGTLKRHLLVHKDASEGTVYKCNICDYEAKQKGTLKASPVSSQRSFRSDKVQMQQVTTKAKVNRIVATSRIPCLVTWEEVTVIRGAVSTIAATNINIWVGSGILIADLSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01014861;
- 90% Identity
- iTF_01014861;
- 80% Identity
- iTF_01014861;