Malt042812.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073434.1:43551023-43554190[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.6 2.6e+02 3.8 6.9 1 23 245 267 245 267 0.99 2 20 0.0021 0.15 14.0 1.9 1 23 273 295 273 295 0.98 3 20 0.33 24 7.1 5.5 1 23 300 322 300 322 0.96 4 20 0.011 0.78 11.8 3.2 1 23 331 354 331 354 0.96 5 20 0.074 5.4 9.1 7.9 1 23 363 386 363 386 0.97 6 20 0.016 1.1 11.3 3.2 1 23 407 429 407 429 0.98 7 20 0.014 0.99 11.4 3.0 1 23 438 461 438 461 0.96 8 20 0.021 1.5 10.9 3.1 1 23 470 492 470 492 0.98 9 20 0.025 1.8 10.6 1.7 1 23 499 521 499 521 0.98 10 20 0.034 2.4 10.2 3.0 1 23 526 548 526 548 0.97 11 20 0.013 0.97 11.5 2.0 1 23 557 580 557 580 0.96 12 20 0.028 2 10.5 5.6 1 23 589 612 589 612 0.97 13 20 0.0047 0.34 12.9 0.9 1 23 618 640 618 640 0.99 14 20 0.0087 0.63 12.1 3.9 1 23 645 667 645 667 0.98 15 20 1.9 1.4e+02 4.7 9.3 1 23 676 699 676 699 0.95 16 20 0.0027 0.2 13.6 3.6 1 23 708 730 708 730 0.99 17 20 0.01 0.74 11.8 2.0 1 23 736 758 736 758 0.98 18 20 0.22 16 7.6 1.9 1 23 763 785 763 785 0.97 19 20 0.015 1.1 11.3 1.7 1 23 794 817 794 817 0.96 20 20 0.31 22 7.2 6.6 1 23 826 849 826 849 0.97
Sequence Information
- Coding Sequence
- ATGGAGAACTTTGGGAAAACAAACTGTAGGTTTTGCCTCGAAATAGTACGTGATggtagtttcaaaataatagaaGGAATTATCGGAGAAATTCTGGATGTTCTTTTGCTGAAGGTGACAACGGAAGGAAATTGTTGTGTTATATGCAACGTCTGTTCTGCAAAAATGTTTGCGGCATTCCAATTCAAAGCGACTTGTATGGACACTGAGGATACTATTTTTCCTTACCTCCGCACTAAAAATTTAGCACTGGTAGACTTAAGAGATGTTTACTTGAAGGAAAGAGGTAAAGAACATTTAAAAGATATGTTAGAAGATGAGAGGATTTGTCGACTGTGTATGCAAGTGATCACCTGCGGTTTTACATCGGTAGAAGAAGTGGATGTTGATAGGCTACGCAGATATATTCCAGAAGTTAACTTTCGTTCCATCAAAGAACCCGTTATCTGCAAAGTTTGTGTCGATTCATTGGACACCCATACCagtttcttaattaatttttgggatataaaaaaagaaactaacAGTGCCATAGAAAACATGTCCAGTATCAAACATGAAGATGTTGAAATTAAATCTGAAGAGAATTATAGTGGCACCCCCATGAAAGATAAACTCACAAGTGAATGCGGATCTAAACATAAGAAAACAGCGAACAATTCTCTGCTTAAGGGCAAACTGAAAAGATACAGACCAAAGGACAAATACAGGAACTCCTCCGGAGACGGGATATATAAATGTGATTCATGTGATTTTAAAACGGGTAATAAGTATTATCATAGAAAACATCAGCGCAAGCACATCCCCGAGCAGATGTTTAAATGTGACTCATGTGATTATAAAGCTATTTATAAGAGCACCCTTAACCGACATCAGCTAAAACACAAGGGACAGAtgtattgctgtaatttttgtGACTTTAAATCCGTTTATAAGAGTTGTCTTGCACGACACCAAGTAATCCACAAAGACATCGTAGAAGTGCAGATGTATGAATGTAATTCGTGtgattttaaaacgaaatataaaaGGAACCTTATAAAACATCTGTTCatgaaacataaaaatatcCCCGAAGAAGATATGCATAAATGTGATTCATGTGGTTATAaaaccaaatataaaaacaactttAAACACCACCAGTTAATGAAACATACAGATAACCCCGTGTACAAATGTGATACCCAACATCAACAAAATCATAAAGAGCAGATGTACAGCTGTAattcttgtaattttaaaacCGTTTATAGGAGTCGTCTTACACGGCATCAGCTAACACATAAAGACATCCCAGAAGTGCAGATGCATGAATGTAAtttgtgtgattttaaaacgaaatataagaACAACCTTGCCCAACATCAATCCATAAAACATAAAGATATCTCTGTAGAAGATGTGTATAAATGTGATTCATGTGATTTTAAAGCTGATAATAAATACTATCTTACAAAACATCAGTATAGACATATCCCTGAGGAGcagatgtttaaatgtgattCATGTGATTATAAAGCTATTTATAAGAACACCCTTAACCAACATCAGCTAAAACACAAGGGAGAGATGTATAGCTGTAATTTTTGTGACTTTAAATCCGTTTATAAGAGTTGTCTTGCACGACACCAGGTAATCCACAAAGACATTGTAGAAGTGCAGATGTATGAATGTAATTCGTGCgattttaaaacgaaatataagaGGAACCTTATACAACATTGGTCCatgaaacataaaaataagTCTGAAGAAGATATGCATAGATGTGATTCATGTggttataaaacgaaatataagaACAACTTTAAACAACACCAGTTAATGAAACATAAAGATAACCCCTTGTATAAATGTGATTCATGCGATTATAAAGGCATTTATAAGAATGCTCTTATCCGACATCAGCAAAAACATAAGAAACAGATGTATGCCTGTAATTCTTGTGATTTTAAAACCGTTTATAAGAGTTGTCTCACACGGCATCAGCTAACACACAAAGACATTCCAGAAGTACAGATGCATAAATGTGATTCgtgtgattttaaaacaaaacacaagAACAACCTTGCCCATCATCATTCCatacaacataaaaattacTCGATAAAGGAcatgtataaatgtgattcaTGTGACTTTAAAACGGGTAATAAGTATTATCTTACAACACATCAACGTAAGCACATCCCCGAGcagatgtttaaatgtgattCATGTGATTATAAAGCTATTTATAAGAGCACTCTTAGCCAACATCAGCAAAAACACAAAGGACAGATGTATAGCTGTAATTCTTGTGACTTTAAATCCGTTTATAAGGTTTGTCTTGCACGACACCAGGTTATACACAAAGACATCGTAGAAGTGCAGGTGTATGAATGTGACTCgtgtgattttaaaacaaaatataaaaggaACCTTATACAACATTGGTCCATGAAACATAAAGATATCTCCGAAGAAGATATGCATAAATGTGATTCATGCagttataaaacgaaatataagaACAATTTTAAGCAACACCAGTTAATGAAACATAAAGACATTCCCGAAGACATGTAG
- Protein Sequence
- MENFGKTNCRFCLEIVRDGSFKIIEGIIGEILDVLLLKVTTEGNCCVICNVCSAKMFAAFQFKATCMDTEDTIFPYLRTKNLALVDLRDVYLKERGKEHLKDMLEDERICRLCMQVITCGFTSVEEVDVDRLRRYIPEVNFRSIKEPVICKVCVDSLDTHTSFLINFWDIKKETNSAIENMSSIKHEDVEIKSEENYSGTPMKDKLTSECGSKHKKTANNSLLKGKLKRYRPKDKYRNSSGDGIYKCDSCDFKTGNKYYHRKHQRKHIPEQMFKCDSCDYKAIYKSTLNRHQLKHKGQMYCCNFCDFKSVYKSCLARHQVIHKDIVEVQMYECNSCDFKTKYKRNLIKHLFMKHKNIPEEDMHKCDSCGYKTKYKNNFKHHQLMKHTDNPVYKCDTQHQQNHKEQMYSCNSCNFKTVYRSRLTRHQLTHKDIPEVQMHECNLCDFKTKYKNNLAQHQSIKHKDISVEDVYKCDSCDFKADNKYYLTKHQYRHIPEEQMFKCDSCDYKAIYKNTLNQHQLKHKGEMYSCNFCDFKSVYKSCLARHQVIHKDIVEVQMYECNSCDFKTKYKRNLIQHWSMKHKNKSEEDMHRCDSCGYKTKYKNNFKQHQLMKHKDNPLYKCDSCDYKGIYKNALIRHQQKHKKQMYACNSCDFKTVYKSCLTRHQLTHKDIPEVQMHKCDSCDFKTKHKNNLAHHHSIQHKNYSIKDMYKCDSCDFKTGNKYYLTTHQRKHIPEQMFKCDSCDYKAIYKSTLSQHQQKHKGQMYSCNSCDFKSVYKVCLARHQVIHKDIVEVQVYECDSCDFKTKYKRNLIQHWSMKHKDISEEDMHKCDSCSYKTKYKNNFKQHQLMKHKDIPEDM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01014984;
- 90% Identity
- -
- 80% Identity
- -