Malt042811.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Monochamus alternatus
Gene Symbol
-
Assembly
GCA_037114965.1
Location
CM073434.1:43545917-43549820[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 4.3 3.1e+02 3.6 6.9 1 23 245 267 245 267 0.99
2 25 0.0025 0.18 13.8 1.9 1 23 273 295 273 295 0.98
3 25 0.4 29 6.8 5.5 1 23 300 322 300 322 0.96
4 25 0.013 0.93 11.5 3.2 1 23 331 354 331 354 0.96
5 25 0.026 1.9 10.6 5.8 1 23 363 386 363 386 0.97
6 25 0.0033 0.24 13.4 2.0 1 23 392 414 392 414 0.99
7 25 0.36 26 7.0 6.8 1 23 419 441 419 441 0.98
8 25 0.0075 0.55 12.3 2.9 1 23 450 473 450 473 0.96
9 25 0.0067 0.48 12.4 6.1 1 23 482 504 482 504 0.99
10 25 0.0063 0.45 12.5 1.7 1 23 510 532 510 532 0.98
11 25 0.54 39 6.4 6.0 1 23 537 559 537 559 0.96
12 25 0.084 6.1 9.0 2.7 1 23 568 591 568 591 0.94
13 25 0.026 1.9 10.6 5.8 1 23 600 623 600 623 0.97
14 25 0.0033 0.24 13.4 2.0 1 23 629 651 629 651 0.99
15 25 0.031 2.2 10.3 4.6 1 23 656 678 656 678 0.98
16 25 0.0048 0.35 12.9 1.3 1 23 687 710 687 710 0.96
17 25 0.0067 0.48 12.4 6.1 1 23 719 741 719 741 0.99
18 25 0.0063 0.45 12.5 1.7 1 23 747 769 747 769 0.98
19 25 0.84 61 5.8 6.0 1 23 774 796 774 796 0.96
20 25 0.018 1.3 11.0 1.7 1 23 805 828 805 828 0.96
21 25 0.088 6.4 8.9 7.9 1 23 837 860 837 860 0.97
22 25 0.0033 0.24 13.4 2.0 1 23 866 888 866 888 0.99
23 25 0.033 2.4 10.2 5.2 1 23 893 915 893 915 0.98
24 25 0.016 1.2 11.2 3.0 1 23 924 947 924 947 0.96
25 25 0.025 1.8 10.6 3.1 1 23 956 978 956 978 0.98

Sequence Information

Coding Sequence
atggAGAACTTTGGGAAGACAAAGTGTAGGTTTTGCCTCGAAATAGTACGTGATggtagtttcaaaataatagaaGGAATTATCGGAGAAATTCTGGATGTTCTTTTGCTGAAGGTGACAACGGAACGAAATTATTGTGCTATATGCAACGTCTGTTCTGCAAAAATGTTTGCGGCATTCCAATTCAAAGCGACTTGTATGGACACTGAGGATACCATTTTTCCTTACCTCCGCACTAAAAATGTATCACTGGTGGACTTAAGAGATgtatatttgaaagaaagaggTAAAGAACATTTAAAAGATATGTTAGAAGACGAGAGGATTTGTCGACTGTGTATGCAAGTGGTCACCTGTGGATTTACATCGGTAGAAGAAGTGAATGTTGATAGGCTACGCAGATATATTCCAGAAGTTAACTTTCGTTCCACCAAAGAACCCGTTATCTGCCAAGTTTGTCTCGATTCATTGGACACCCATACCagtttcttaattaatttttgggatataaaaaaagaaactgaCAGTGCCATAGAAAACATGTCCAGTATTAAACATGAAGATGTTGAAATTAAATCTGAAGAGAATTATAGTGGCACCCCCATGAAAGATAAACTCACAAGTGAATGCGGATCTAAACATAAGAAAACAACGAACAATTCTCTGCTTAAGGGCAAACTGAAAAGATACAGACCAAAGGACAAATACAGGAACTCCTCCGGAGACGGGATATATAAATGTGATTCATGTGATTTTAAAACGGGTAATAAGTATTATCATAGAAAACACCAGCGTAAGCACATCCCCGAGcagatgtttaaatgtgattCATGTGATTATAAAGCTATTTATAAGAGCACCCTTAACCGACATCAGCTAAAACACAAGGGACAGAtgtattgctgtaatttttgtGACTTTAAATCCGTTTATAAGAGTTGTCTTGCACGACACCAGGTAATCCACAAAGACATCATAGAAGTGCAGATGTATGAATGTAATTCATGtgattttaaaacgaaatataaaaGGAACCTTATAAAACATCTGTTCatgaaacataaaaatatcCCCGAAGAAGAAATGCATAAATGTGATTCATGTggttataaaacgaaatataagaACAACTTTAAACAACACCAATTAATGAAACATACAGATAACCCGGTGTACAAATGTGATTCATGCGATTATAAAGCCATTTATAAAAGCACTCTTACCCAACATCAGCAAAAACATAAGGAGCAGATGTACAGCTGTAattcttgtaattttaaaacCGTTTATAAGAGTTGTCTTACACGCCATCACCTAATACACAAAGATATCCCAAAAGTGCAGATGTACCAATGCAATTCGTGtgattttaaaacgaaatataagcACAATCTTGCTCAACATCAGGACATAGAACATAAAAATATCTCGGTAAAAAACATGTACAAATGTGATTCATGTGATTTTAAAACGAATAATAAGtactattataaaaaacatCAGCGAAAGCACATCCCCGAGCTGATGTTTAAATGTGATTCATGTGATTATAAAGCTATTTATAAGAGCACTCTTAACCAGCATCAGCTAAAACACAAGGGACAGATGTATTGCTGTAAATTTTGTGACTTTAAATCCGTTTATAAGAGTTGTCTTGCACGACACCAGGTAATCCACAAAGACATTGTAGAAGTGCAGATGTTTGAATGTAATTCGTGtgattttaaaacgaaatataagaGGAACCTTATACAACATTCGTCCatgaaacataaaaataagTCTGAAGAAGATATGCATAAATGTGATTCATGTggttataaaacgaaatataagaACAACTTTAAACAACACCAGTTAATGAAACATACAGATAACCCCATGTACAAATGTGATTCATGCGATTATAAAGCCATTTATAAAAGCACTCTTACCCAACATCAGCAAAAACATAAGGAGCAGATGTACAGCTGTAattcttgtaattttaaaacCGTTTATAAGAGTTGTCTCACACGGCATCAGCTAATACACAAAGACATCCCAAAAGTGCAGATGTACCAATGCAATTCATGtgattttaaaacgaaatataagaACAATCTTGCCCAACATCAGGACATAGAACATAAAAATATCTCGGTAAAAAACATGTACAAATGTGACTCATGTGATTTTAAAACGAATAATAAGtactattataaaaaacatCAGCGAAAGCACATCCCCGAGcagatgtttaaatgtgattCATGTGATTATAAAGCTATTTATAAGAGCACCCTTAACCAACATCAGCTAAAACACAAGGGACAGAtgtattgctgtaatttttgtaactttaaatCCGTTTATAAGAGTTGTCTTGCACGACACCAGGTAATCCACAAAGACATCGTAGAAGTGCAGGTGTATGAATGTGATTCGTGtgattttaaaacgaaatataaaaGGAACCTTATACAACATTGGTCCatgaaacataaaaatatcCCCGAAGAAGATATGCATAAATGTGATTCATGtggttataaaacaaaatataaaaacaactttAAACACCACCAGTTAATGAAACATACAGATAACCCCATGTACAAATGTGATTCATGCGATTATAAAGCCATTTATAAGAGCACTCTTACCCAACATCAGCAAAAACATAAAGACCAGATGTACAGCTGTAATTCTTGCAATTTTAAAACCGTTTATAAGAGTTGTCTCACACGGCATCAGCTAATGCACAAAGATATCCCAGATGTGCAGGTGCATGAATGTAAtttgtgtgattttaaaacgaaatataagaACAACCTTGCCCAACATCAATCCATAAAACATAAAGATATCTCTGTAGAAGATGTGTATAAATGTGATTCATGTGATTTTAAAgctgataataaatattatcttaCAAAACATCAGTATAGACATATCCCTGAGGAGCAGATGTTTAAATGTGACTCATGTGATTATAAAGCTATTtataagaacactctttaa
Protein Sequence
MENFGKTKCRFCLEIVRDGSFKIIEGIIGEILDVLLLKVTTERNYCAICNVCSAKMFAAFQFKATCMDTEDTIFPYLRTKNVSLVDLRDVYLKERGKEHLKDMLEDERICRLCMQVVTCGFTSVEEVNVDRLRRYIPEVNFRSTKEPVICQVCLDSLDTHTSFLINFWDIKKETDSAIENMSSIKHEDVEIKSEENYSGTPMKDKLTSECGSKHKKTTNNSLLKGKLKRYRPKDKYRNSSGDGIYKCDSCDFKTGNKYYHRKHQRKHIPEQMFKCDSCDYKAIYKSTLNRHQLKHKGQMYCCNFCDFKSVYKSCLARHQVIHKDIIEVQMYECNSCDFKTKYKRNLIKHLFMKHKNIPEEEMHKCDSCGYKTKYKNNFKQHQLMKHTDNPVYKCDSCDYKAIYKSTLTQHQQKHKEQMYSCNSCNFKTVYKSCLTRHHLIHKDIPKVQMYQCNSCDFKTKYKHNLAQHQDIEHKNISVKNMYKCDSCDFKTNNKYYYKKHQRKHIPELMFKCDSCDYKAIYKSTLNQHQLKHKGQMYCCKFCDFKSVYKSCLARHQVIHKDIVEVQMFECNSCDFKTKYKRNLIQHSSMKHKNKSEEDMHKCDSCGYKTKYKNNFKQHQLMKHTDNPMYKCDSCDYKAIYKSTLTQHQQKHKEQMYSCNSCNFKTVYKSCLTRHQLIHKDIPKVQMYQCNSCDFKTKYKNNLAQHQDIEHKNISVKNMYKCDSCDFKTNNKYYYKKHQRKHIPEQMFKCDSCDYKAIYKSTLNQHQLKHKGQMYCCNFCNFKSVYKSCLARHQVIHKDIVEVQVYECDSCDFKTKYKRNLIQHWSMKHKNIPEEDMHKCDSCGYKTKYKNNFKHHQLMKHTDNPMYKCDSCDYKAIYKSTLTQHQQKHKDQMYSCNSCNFKTVYKSCLTRHQLMHKDIPDVQVHECNLCDFKTKYKNNLAQHQSIKHKDISVEDVYKCDSCDFKADNKYYLTKHQYRHIPEEQMFKCDSCDYKAIYKNTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01015077;
90% Identity
-
80% Identity
-