Malt004390.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073426.1:71245368-71256921[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00012 0.0086 17.9 1.1 1 23 364 386 364 386 0.98 2 12 0.0039 0.29 13.1 0.2 1 23 388 411 388 411 0.96 3 12 2e-06 0.00015 23.5 1.4 2 23 486 507 485 507 0.97 4 12 0.00026 0.019 16.8 0.4 1 23 513 535 513 535 0.97 5 12 0.00039 0.029 16.3 1.4 1 23 541 563 541 563 0.97 6 12 6e-05 0.0043 18.9 1.5 1 23 569 591 569 591 0.98 7 12 0.00045 0.033 16.1 0.7 1 23 597 619 597 619 0.98 8 12 8.5e-07 6.1e-05 24.7 2.1 1 23 627 649 627 649 0.98 9 12 0.0054 0.39 12.7 0.2 1 23 655 677 655 677 0.96 10 12 4.2e-05 0.003 19.4 1.3 1 23 683 705 683 705 0.98 11 12 0.0038 0.28 13.2 0.5 1 23 711 733 711 733 0.97 12 12 1.9e-05 0.0013 20.5 0.9 1 23 739 761 739 761 0.97
Sequence Information
- Coding Sequence
- ATGGCTGAGGTGGATAAtccaaaatatgaagaattgtgCAGATTGTGTGCAACAAAAACAACAATGGTTTTGgcaataaacatatttgaaaatgaAGGTACTATAAgacaaattagtaaaaaaatatgtacttgtCTTCCAGTTCAGgttcACGAGACCGATGAATTACCAAAAATGATTTGTGAAAATTGTTTGTacaagttagaattattttgcGATTTTAGGGAGCGGTCAGCTCGAACTGAGAGATTATTAGTGGagttatataaagaaataaagtcATCTCGAGGACATAGTGACCAACAGGCTTGTATGGTCCCAATAGGTCATAACGACTTAATTATGGTGCAGCAACATCAATTATTAAATGAACAGAATTTGCAAAGTGTTCCAGAGATTGATCTTTCTCATCTTGGCCAACGTGAAAGCATGATTGTAGAgcatgaaataatattaactcaTCATGTTGACATAAATTCTCATTCATTGGATAGTATAGATTTGAATCATCATGATTTAACAAATCAAGATATTTCCAATCAAAGTTTACAAACTCAAGAGTCTGTTTTAGTTGACAATACTGCTCATACTATTCAAGATACTAGATTTACAGatagtttaaatttaatacaacaGCATCAGTTATTATCAGATCAATTCAGAGTTCAGCAAGACTTGCCTGTAAATATGGCATCAAACGAAAATACAAGCAGTAATATGCAACTTAGTGATGAGATGAAAGATATTCATCACGAAACCGAAACATTCTCTCAAGATAAAAACGAAGGATGTAATAGTATATCCACTATTGAATATGACAAACCAAAATTAGATAATAATAGTTCTTTATCAGTTGACACTCATTTGAATAATATTCCGTTAACTGATACCTATAgcgaagaaaaaattaataagatgGAAAGTTTTAAACACGAAGACAGTAGCAGTGGGCACTCATTACTGGTAGATGAACagttaaataatatagatatatcaAATTCCTTATCTGATAAGCAAGTATacagtttaaatttagaaagcAATGACTCTTTAGTTAGTTTACACTTAAATAATGTCTCTAAGGAGTGgttttattgcaatatatgtGGAAAGATTTGCGAACAAAAGGCTGACTTTGAAGTACATTATGAAactcatttttataaatgttcaaTTTGTCTTGCAGTATTCACTAATTTGGAAGTGCTTAAATCTCACAGAAAAGAAGCACATGGGGCTTGTTTAGATGATCCTAagCCTGTAAAAACAAGACTGAAACGAGCAACTGTGCCAGAGAATGGTGACAATGGTTTAAACCCAGATAGTAACAGTGAGGACAGTGAAGGTGAATCCAACCAAGTTAGTTTAGAAGAAGAGGAACCTCCTGAAGATTCTACAAATTCGGTAGTGAATTCTAACtgtaataacaataaaagaaaaaagtgGTCTCCAAAAGTTTGTGAGGAGTGCGGCAAGACTTacaaaactaattataaattgtcAGAGCATATGAGGAAACACACTGGAGAGAAACCTTATAAATGTCAGTCTTGCGACAAGGCATTTAGATCAAAGATTGGATTAGCTCAACATGAAGCCAAACACACAGGACAGTACGATTTTGCTTGCCCAACCTGTGGGAAAGGATTCCAATGTAAAAGTTATTTAATGGTGCATCAGCGAGTGCATTCAGATATCAAACCTTACCCTTGCACAACCTGTGGCCAaaactttaaaacaaaacagtcTTTGCTGGATCATACCAATAGACATTTAGGTGTCAAACCATATATGTGTGATATTTGTGGTCGAGGTTTTATCACTaaaggtctGTGTAGAGCACATCAAAAAGTACATTCTGGATTAGACAATAGGAAATATTCTTGTAAGATTTGTAGTAAAAGATTTGTTTCAAAAAGTTATCTACAAACTCATTTAAGGATACATACTGGGGAAAAACCATTCATGTGTGAggtCTGCGGCAAAGGATTCCTCACTAGGGTTGATCTAAAAATTCATTCGACAATGCATACTGGGGAAAAGTCATATGTTTGTGAAATGTGTGGTAAAGCCTTTGCCAGGAGAGATGCATTACGCTGTCATAGAAGGTCCCATACGGGAGAAAGGCCTTATAGTTGTGATCTTTGCGGACAAACTTTCACACAGTTTACACCAATGGCAATTCACAAACGCTTACACACTGGAGAAAGGCCTTATGCTTGCGAGACCTGTGGGAAAACGTTTGTGTCAAGGTCAACTATGCAGTCGCATGCAAAGAAACATGTGCGGTga
- Protein Sequence
- MAEVDNPKYEELCRLCATKTTMVLAINIFENEGTIRQISKKICTCLPVQVHETDELPKMICENCLYKLELFCDFRERSARTERLLVELYKEIKSSRGHSDQQACMVPIGHNDLIMVQQHQLLNEQNLQSVPEIDLSHLGQRESMIVEHEIILTHHVDINSHSLDSIDLNHHDLTNQDISNQSLQTQESVLVDNTAHTIQDTRFTDSLNLIQQHQLLSDQFRVQQDLPVNMASNENTSSNMQLSDEMKDIHHETETFSQDKNEGCNSISTIEYDKPKLDNNSSLSVDTHLNNIPLTDTYSEEKINKMESFKHEDSSSGHSLLVDEQLNNIDISNSLSDKQVYSLNLESNDSLVSLHLNNVSKEWFYCNICGKICEQKADFEVHYETHFYKCSICLAVFTNLEVLKSHRKEAHGACLDDPKPVKTRLKRATVPENGDNGLNPDSNSEDSEGESNQVSLEEEEPPEDSTNSVVNSNCNNNKRKKWSPKVCEECGKTYKTNYKLSEHMRKHTGEKPYKCQSCDKAFRSKIGLAQHEAKHTGQYDFACPTCGKGFQCKSYLMVHQRVHSDIKPYPCTTCGQNFKTKQSLLDHTNRHLGVKPYMCDICGRGFITKGLCRAHQKVHSGLDNRKYSCKICSKRFVSKSYLQTHLRIHTGEKPFMCEVCGKGFLTRVDLKIHSTMHTGEKSYVCEMCGKAFARRDALRCHRRSHTGERPYSCDLCGQTFTQFTPMAIHKRLHTGERPYACETCGKTFVSRSTMQSHAKKHVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00110780;
- 90% Identity
- iTF_00110780;
- 80% Identity
- -