Agla008585.1
Basic Information
- Insect
- Anoplophora glabripennis
- Gene Symbol
- -
- Assembly
- GCA_000390285.2
- Location
- NW:1690-13498[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.1e-05 0.00065 19.7 0.3 1 23 358 380 358 380 0.98 2 12 0.0011 0.034 14.3 0.4 1 23 382 405 382 405 0.96 3 12 1.3e-06 4.1e-05 23.5 1.4 2 23 480 501 479 501 0.97 4 12 0.00017 0.0053 16.9 0.4 1 23 507 529 507 529 0.97 5 12 0.00026 0.0079 16.3 1.4 1 23 535 557 535 557 0.97 6 12 3.9e-05 0.0012 18.9 1.5 1 23 563 585 563 585 0.98 7 12 0.00029 0.009 16.1 0.7 1 23 591 613 591 613 0.98 8 12 5.6e-07 1.7e-05 24.7 2.1 1 23 621 643 621 643 0.98 9 12 0.0035 0.11 12.7 0.2 1 23 649 671 649 671 0.96 10 12 2.7e-05 0.00084 19.4 1.3 1 23 677 699 677 699 0.98 11 12 0.0025 0.077 13.2 0.5 1 23 705 727 705 727 0.97 12 12 1.2e-05 0.00037 20.5 0.9 1 23 733 755 733 755 0.97
Sequence Information
- Coding Sequence
- ATGGCTGCAGTTGATAATCCAAAATTTGAAGAACTGTGTAGATTATGTGCAACAAAGACAACAATGGTTTtggcaataaatatatttgaaaatgagGGTACCATAAggcaaattagtaaaaaaatatgtacttgtCTTCCTGTTCAGgttcatGAGACCGATGAATTACCAAAAATGATTTgtgaaaattgtttgtacaaacTAGAATTATTTTGTGATTTTCGGGAGCGGTCGGCTCGAACTGAAAGATTACTAGTGGAattatataaagaaataaaggCATCTCGAGTACATAGTGACCAACAGTCATGTATGGTTCCACTTGGTCATAATGATCTAATTATGGTGCAACAACATGAACTATTGAGTGAACAGAATTTGCAAAACGTTCCGGAGATTGACCTTTCTCATCTTGGCCAACGTGAAGGCATGATTGTACAGCATGAAATTATATTAACTCATCACGTTGATATGAATTCTCATTCATTGGACAGTATAGATTTGAATCATCATGATTTAACAAATCAGGATATTTCCAATCAAAGTTTACAAACACAAGAATCTGTTTTGGTTGATAATACTGCTCATACGATTCAAGATACTAGATTTACagatagtttaaatttaatacagcAGCATCAGTTACTGTCAGATCAATTCAGACTCCAACAAGACTTGCCTGTAAATATGGAATCGGATGAAAATACAGCGAATAATATGCAACTTGGTGATGAGATTCAGCAAGAAAACGAAAGATTCCCTCAAGAAAAAAGTCAAGGATGTAATAGCATTCCCACTATTGAATATGATGAAACAAAGTTAGACAATGGTTCTCTGTCGGTTGACTCGCATTTGAAtaatattccattaaataatagctacagtgaagaagaaaataataagctGGAAAGTTTTAAACACGAAGACAGTAGTAGTGGACATTCGTTACTAGTAGACGAACAGTTAAATAACATAGATATATCAAATTCGTTAGAGGATAAACAAGTATacagtttaaatttagaaaatagcGACGCAATGGTACACATAAATAATGTCCCTAAGGAGTggttttattgcaatatttgcggGAAGATTTATGAACAAAAGGCTGACTTTGAAGTACACTATGAAACTCACTTTTATAAGTGTTCAATTTGTTTTGCAGTATTCACTAATTTGGAAGTGCTTAAATCTCATCGAAAAGAAGCCCATGGTGCTTGTTTAGATGATACCAAGCCTGTAAAAACGAGACTGAAAAGAGCAACTATACTAGAGAACGGTGAGGATGGTTCCAAACCAGATAGTAACAGCGAAGAAAGCGAAGGAGAATCTAATCAAATTAGTTTAGAAGAGGAGGAGCCTCCCGAAGATTCTACAAATTCAGTAGTGGATTCTAACGCTAGTAACAACAAAAGGAAAAAGTGGTCTCCAAAAGTTTGTGAGGAATGCGGCAAAACTTATAAGACCAATTATAAGCTGTCGGAACATATGAGGAAACACACTGGAGAGAAACCTTACAAGTGTCAATCCTGTGATAAGGCATTTAGATCAAAAATTGGGTTAGCCCAACACGAAGCCAAACATACAGGGCAATACGATTTTGCTTGTCCGACCTGTGGAAAAGGATTCCAATGTAAAAGTTATTTGATGGTGCATCAACGGGTCCATTCAGACATCAAACCTTATCCTTGTACGACCTGCGGCCAAAACTTTAAAACGAAACAGTCTTTGCTGGATCATACAAATAGGCATTTAGGCGTTAAACCGTACATGTGTGATATCTGTGGTCGTGGCTTTATTACCaaagGACTGTGTAGAGCCCACCAAAAAGTACATTCTGGGTTGGATAACAGGAAATATTCTTGTAAGATTTGTAGTAAAAGATTCGTGTCCAAAAGCTATTTACAGACTCATTTAAGAATACATACCGGAGAAAAACCATTCATGTGTGAGGTCTGCGGGAAGGGATTTCTCACAAGGGTTGACCTTAAAATACATTCTACCATGCATACTGGGGAAAAATCGTATGTATGTGAAATGTGCGGTAAAGCTTTTGCCAGGAGAGACGCATTGCGCTGCCACAGAAGATCCCACACAGGGGAAAGGCCTTATAGttGCGACCTTTGCGGTCAAACATTCACGCAATTTACACCGATGGCAATTCACAAACGCTTACACACCGGAGAAAGGCCCTATGCTTGCGAGACCTGTGGGAAAACGTTCGTGTCGAGGTCAACTATGCAGTCGCACGCAAAGAAACACGTGCGGTga
- Protein Sequence
- MAAVDNPKFEELCRLCATKTTMVLAINIFENEGTIRQISKKICTCLPVQVHETDELPKMICENCLYKLELFCDFRERSARTERLLVELYKEIKASRVHSDQQSCMVPLGHNDLIMVQQHELLSEQNLQNVPEIDLSHLGQREGMIVQHEIILTHHVDMNSHSLDSIDLNHHDLTNQDISNQSLQTQESVLVDNTAHTIQDTRFTDSLNLIQQHQLLSDQFRLQQDLPVNMESDENTANNMQLGDEIQQENERFPQEKSQGCNSIPTIEYDETKLDNGSLSVDSHLNNIPLNNSYSEEENNKLESFKHEDSSSGHSLLVDEQLNNIDISNSLEDKQVYSLNLENSDAMVHINNVPKEWFYCNICGKIYEQKADFEVHYETHFYKCSICFAVFTNLEVLKSHRKEAHGACLDDTKPVKTRLKRATILENGEDGSKPDSNSEESEGESNQISLEEEEPPEDSTNSVVDSNASNNKRKKWSPKVCEECGKTYKTNYKLSEHMRKHTGEKPYKCQSCDKAFRSKIGLAQHEAKHTGQYDFACPTCGKGFQCKSYLMVHQRVHSDIKPYPCTTCGQNFKTKQSLLDHTNRHLGVKPYMCDICGRGFITKGLCRAHQKVHSGLDNRKYSCKICSKRFVSKSYLQTHLRIHTGEKPFMCEVCGKGFLTRVDLKIHSTMHTGEKSYVCEMCGKAFARRDALRCHRRSHTGERPYSCDLCGQTFTQFTPMAIHKRLHTGERPYACETCGKTFVSRSTMQSHAKKHVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01227572; iTF_01014871;
- 90% Identity
- iTF_01014871;
- 80% Identity
- -