Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073428.1:18122353-18124102[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 4.1e-06 0.0003 22.5 4.1 2 23 169 190 168 190 0.96

2 11 2.8e-06 0.0002 23.0 0.8 1 23 196 218 196 218 0.98

3 11 9.9e-05 0.0072 18.2 1.6 1 23 224 246 224 247 0.96

4 11 1.8e-06 0.00013 23.7 1.8 3 23 338 358 336 358 0.97

5 11 2.1e-06 0.00015 23.4 1.5 1 23 364 386 364 386 0.96

6 11 2.3e-05 0.0017 20.2 1.2 1 23 392 414 392 414 0.98

7 11 0.00012 0.0085 18.0 5.3 1 21 421 441 421 442 0.93

8 11 0.0058 0.42 12.6 3.0 2 23 460 481 459 481 0.96

9 11 5.5e-05 0.004 19.0 1.1 1 23 487 509 487 509 0.98

10 11 2.5e-07 1.8e-05 26.4 0.9 1 23 515 537 515 537 0.98

11 11 2.4e-06 0.00018 23.2 4.0 1 23 543 565 543 565 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	4.1e-06	0.0003	22.5	4.1	2	23	169	190	168	190	0.96
2	11	2.8e-06	0.0002	23.0	0.8	1	23	196	218	196	218	0.98
3	11	9.9e-05	0.0072	18.2	1.6	1	23	224	246	224	247	0.96
4	11	1.8e-06	0.00013	23.7	1.8	3	23	338	358	336	358	0.97
5	11	2.1e-06	0.00015	23.4	1.5	1	23	364	386	364	386	0.96
6	11	2.3e-05	0.0017	20.2	1.2	1	23	392	414	392	414	0.98
7	11	0.00012	0.0085	18.0	5.3	1	21	421	441	421	442	0.93
8	11	0.0058	0.42	12.6	3.0	2	23	460	481	459	481	0.96
9	11	5.5e-05	0.004	19.0	1.1	1	23	487	509	487	509	0.98
10	11	2.5e-07	1.8e-05	26.4	0.9	1	23	515	537	515	537	0.98
11	11	2.4e-06	0.00018	23.2	4.0	1	23	543	565	543	565	0.99

Sequence Information

Coding Sequence: atGGAAGTTTCTCaaacaaatattgaaataaataattttccagACATATGTCGTGTCTGTTTACAATTCGGAGAATTCAACCCTCTCGAAATTAGCATCTTTGTTTCTCACACAACATGTATCGACACTTTAAGAAACCTGACAGGCATAGAGataagagaAGATGACAAATTACCTACAAATATATGCAATACTTGTGTGAAACAACTAAGCGATATtgaattgtttattaaattatgcaAATGCAACGATACGTATCTCAAATCTTTATTAGCCGCAGAGGATAAAGAATCTTTACAAACTTCTGATAATGTTCTTTATGACGGTTTTGAGGAGGAAGACAGTTTTGATGAAATCGATAACATAGCACTGTCAGAACGCAAAATAAGGATCAAATCTCAACTTATAGATAAAGATGATTACAAAATAAATCCaagaaatgaatttaaaattagaaagcgAAAAGTTAACTCTAGGAAAACCGCAAAGCGTATTGAAGAGTGCGAGTGTAAAATTTGTGGGAAGAAATTTACCAGACGGGGAGGATTGAAACGCCACTCGAAAACCCATTTAGGTATCAAGCCTTTTGAATGTAAAACTTGTGGTAAGACTTTTGTAGAAAAGGCTACTCTAAATAGGCACTATCTGATACATACTGGTGAGAAACCATTTGAATGTAACCTATGCGGAAAAATGACGACTAGAAAAGATCAAATACTAGAACACATTAATAAACATCATCCTAATGCGGTTAATTGTGATTTTGTTATTACAGAACATAAAAGAAGTGACACTGGCAGAAATgacgtttttattgaaagtaAAAACGATACTATAAATCCTACAAAAGAAAAGTGTATCACCAAAGAAGGTAGTATAATTGGTAATAAAATTCAAAGCAGTGAAGATGAAAAGGACCAAACTGATTTTAGTTTCGAAATAAATGACGACAGTTCAAAAATTGGTGAGGTGAGACCATTCAAAACTAAAAAGAGGATTGAAATTTGCTTGTGTAATCTTTGTGGCAAAGTATTTCGAAGAAAAGGTTACCTAAAGAATCACATGGCTATCCATGCGAAAATTAAACCGTTTGAATGTAAAATTTGTGGGAAAGGATTCACTCAGAGACATGCTCTAACACGGCATAATTTGGTGCACACAAAAGAACGGCCGTTTCAGTGTAATCTTTGCGGAAAGACTTTTACCAGAAAGGAGATATTAATGGATCATTTAAAGAATCATGAAGAAGGAAGTAAACCCTACCTCTGTTTCCATTGCGGAAAGTGCTTTTCCAACAAGGATTATCTCAGCAAACATTTGAAATACTACTTGCCCGGAAAGGGGAAAAGAAAAACCAACTCAGAAGAGAAAAAGTGCATATGTCCTCAATGCGGAAAACAATTACACTCTGTGTCTTACTTGAAAACCCATCTTTTAACACACACCGGAGAAAAACCATATGAATGTAACATATGTGGCAACAGGTTCACGGTTCTGAGGTCTTTAAATCATCACTTAAATATTCACAAGGGCGTCAAGCCGTACCAGTGTACACAGTGTGACAAAGCCTTCCGAACCTCCGGTTCTTTgaggaaacatattttactccACACCGGGGAAAGACCTTTCAAGTGTACCAGTTGTGAAAAAGGTTTCATCAGACGCAGTCATTTGAAGAGGCATTTGAGGATACATTAA
Protein Sequence: MEVSQTNIEINNFPDICRVCLQFGEFNPLEISIFVSHTTCIDTLRNLTGIEIREDDKLPTNICNTCVKQLSDIELFIKLCKCNDTYLKSLLAAEDKESLQTSDNVLYDGFEEEDSFDEIDNIALSERKIRIKSQLIDKDDYKINPRNEFKIRKRKVNSRKTAKRIEECECKICGKKFTRRGGLKRHSKTHLGIKPFECKTCGKTFVEKATLNRHYLIHTGEKPFECNLCGKMTTRKDQILEHINKHHPNAVNCDFVITEHKRSDTGRNDVFIESKNDTINPTKEKCITKEGSIIGNKIQSSEDEKDQTDFSFEINDDSSKIGEVRPFKTKKRIEICLCNLCGKVFRRKGYLKNHMAIHAKIKPFECKICGKGFTQRHALTRHNLVHTKERPFQCNLCGKTFTRKEILMDHLKNHEEGSKPYLCFHCGKCFSNKDYLSKHLKYYLPGKGKRKTNSEEKKCICPQCGKQLHSVSYLKTHLLTHTGEKPYECNICGNRFTVLRSLNHHLNIHKGVKPYQCTQCDKAFRTSGSLRKHILLHTGERPFKCTSCEKGFIRRSHLKRHLRIH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00110782;
90% Identity: -
80% Identity: -